Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
MMB-2201 MMB-2201 1616253-26-9 C20H27FN2O3
1,2,4-Triazolylsodium 1,2,4-Triazolylsodium 41253-21-8 C2H4N3Na
Pyridine,2,2'-(1,3-phenylene)bis- Pyridine,2,2'-(1,3-phenylene)bis- 136538-84-6 C16H12N2
1(tertbutoxycarbonyl)4,4difluoropyrrolidine3carboxylic acid 1(tertbutoxycarbonyl)4,4difluoropyrrolidine3carboxylic acid 1196145-11-5 C10H15F2NO4
2,6-Bis[(4R)-benzyl-2-oxazolin-2-yl]pyridine 2,6-Bis[(4R)-benzyl-2-oxazolin-2-yl]pyridine 365215-38-9 C25H23N3O2
5-BroMo-2-chloro-thiazolo[5,4-b]pyridine 5-BroMo-2-chloro-thiazolo[5,4-b]pyridine 1355241-50-7 C6H2BrClN2S
propan-2-one compound with imidazo[1,2-a]pyridine (1:1) propan-2-one compound with imidazo[1,2-a]pyridine (1:1) 116355-08-9 C10H10N2O
5-AMino-2-chloropyriMidine-4-carboxaMide 5-AMino-2-chloropyriMidine-4-carboxaMide 189747-29-3 C5H5ClN4O
5-METHYL-1,2,4-OXADIAZOL-3-AMINE 5-METHYL-1,2,4-OXADIAZOL-3-AMINE 40483-47-4 C3H5N3O
4-(CHLOROMETHYL)-1-TRITYL-1H-IMIDAZOLE 4-(CHLOROMETHYL)-1-TRITYL-1H-IMIDAZOLE 103057-10-9 C23H19ClN2
BTL benzotriazole BTL benzotriazole
Benzotriazole derivative Benzotriazole derivative
3-bromo-1-(oxan-2-yl)-1h-pyrazole 3-bromo-1-(oxan-2-yl)-1h-pyrazole 1044270-96-3 C8H11BrN2O
6-Bromo-8-methyl-imidazo[1,2-a]pyridine-2-carboxylic acid ethyl ester 6-Bromo-8-methyl-imidazo[1,2-a]pyridine-2-carboxylic acid ethyl ester 907945-82-8 C11H11BrN2O2
alpha-Glucosyl Hesperidin alpha-Glucosyl Hesperidin 161713-86-6 C34H44O20
3-[1-(4-Amino-butyl)-1H-[1,2,3]triazol-4-yl]-phenylamine 3-[1-(4-Amino-butyl)-1H-[1,2,3]triazol-4-yl]-phenylamine 1626413-52-2 C12H17N5
5-bromo-4-methylnicotinonitrile 5-bromo-4-methylnicotinonitrile 890092-52-1 C7H5BrN2
Sulfuric acid, mono[(1R,2S,5R)-7-oxo-2-[[[(3S)-3-pyrrolidinyloxy]amino]carbonyl]-1,6-diazabicyclo[3.2.1]oct-6-yl] ester Sulfuric acid, mono[(1R,2S,5R)-7-oxo-2-[[[(3S)-3-pyrrolidinyloxy]amino]carbonyl]-1,6-diazabicyclo[3.2.1]oct-6-yl] ester 1452458-72-8 C11H18N4O7S
METHDILAZINE (200 MG) METHDILAZINE (200 MG) 1982-37-2 C18H20N2S
2,4(1H,3H)-Pyrimidinedione, 1-ethenyl- 2,4(1H,3H)-Pyrimidinedione, 1-ethenyl- 15765-17-0 C6H6N2O2
2,2'-Bioxazole, 4,4'-dicyclohexyl-4,4',5,5'-tetrahydro-, (4S,4'S)- 2,2'-Bioxazole, 4,4'-dicyclohexyl-4,4',5,5'-tetrahydro-, (4S,4'S)- 2368835-34-9 C18H28N2O2
4H-Imidazo[4,5-c]pyridin-4-one, 3,5,6,7-tetrahydro-3-methyl- 4H-Imidazo[4,5-c]pyridin-4-one, 3,5,6,7-tetrahydro-3-methyl- 1369160-23-5 C7 H9 N3 O
(2S,3R)-2-Methyl-3-pyrrolidinol (2S,3R)-2-Methyl-3-pyrrolidinol 688736-94-9 C5H11NO
ethyl 5-chloro-6-fluoropyrazolo[1,5-a]pyrimidine-3-carboxylate ethyl 5-chloro-6-fluoropyrazolo[1,5-a]pyrimidine-3-carboxylate 2359650-50-1 C9H7ClFN3O2
4-bromo-3-cyclohexyl-1-isopropyl-1H-pyrazole 4-bromo-3-cyclohexyl-1-isopropyl-1H-pyrazole
2,4-dichloro-7-fluoropyrido[3,2-d]pyrimidine 2,4-dichloro-7-fluoropyrido[3,2-d]pyrimidine 1824318-03-7 C7H2Cl2FN3
6-(2,2-Difluoropropyl)thieno[2,3-d]pyrimidin-4(3H)-one 6-(2,2-Difluoropropyl)thieno[2,3-d]pyrimidin-4(3H)-one 2163772-41-4 C9H8F2N2OS
Tramazoline Tramazoline 1082-57-1 C13H17N3
5-Bromo-1,3-dimethyl-1H-pyrazole 5-Bromo-1,3-dimethyl-1H-pyrazole 5744-70-7 C5H7BrN2
5,6,7,8,9,10-hexahydrocycloocta[b]pyridine 5,6,7,8,9,10-hexahydrocycloocta[b]pyridine 28712-60-9 C11H15N
1,3-Benzenedicarboxylic acid, 4,6-di-1H-imidazol-1-yl- 1,3-Benzenedicarboxylic acid, 4,6-di-1H-imidazol-1-yl- 2374700-80-6 C14H10N4O4
2-(4-methoxyphenyl)-2-pyrrolidin-1-ylacetonitrile 2-(4-methoxyphenyl)-2-pyrrolidin-1-ylacetonitrile 15190-12-2 C13H16N2O
5-methyl-2-phenyl-1H-imidazole-4-carboxylic acid 5-methyl-2-phenyl-1H-imidazole-4-carboxylic acid 28824-94-4 C11H10N2O2
dichlorobis(3-pyridylcarboxamide-N1)cobalt dichlorobis(3-pyridylcarboxamide-N1)cobalt 6856-47-9 C12H12Cl2CoN4O2
(S)-3-methyl-2-(pyrrolidin-2-yl)pyridine (S)-3-methyl-2-(pyrrolidin-2-yl)pyridine 1213567-87-3 C10H14N2
4,4'-((2-methyl-1,4-phenylene)bis(ethene-2,1-diyl))dipyridine 4,4'-((2-methyl-1,4-phenylene)bis(ethene-2,1-diyl))dipyridine 2446431-88-3 C21H18N2
1-benzyl-4-pyrrolidin-1-ylpiperidine, dihydrochloride 1-benzyl-4-pyrrolidin-1-ylpiperidine, dihydrochloride 4983-38-4 C16H26Cl2N2
1-Methyl-1,2,3-triazole 1-Methyl-1,2,3-triazole 16681-65-5 C3H5N3
(2S,4R)-4-Fluoropyrrolidine-2-carboxylic acid (2S,4R)-4-Fluoropyrrolidine-2-carboxylic acid 21156-44-5 C5H8FNO2
(2S,5R)-7-oxo-2-((((R)-pyrrolidin-3-yl)oxy)carbamoyl)-1,6-diazabicyclo[3.2.1]octan-6-yl hydrogen sulfate (2S,5R)-7-oxo-2-((((R)-pyrrolidin-3-yl)oxy)carbamoyl)-1,6-diazabicyclo[3.2.1]octan-6-yl hydrogen sulfate 1452458-70-6 C11H18N4O7S
1H-Benzimidazole, 2,2',2'',2'''-[1,1'-biphenyl]-3,3',5,5'-tetrayltetrakis- 1H-Benzimidazole, 2,2',2'',2'''-[1,1'-biphenyl]-3,3',5,5'-tetrayltetrakis- 1572338-07-8 C40H26N8
Pyridine, 5-chloro-2-(chloromethyl)-3-[[[tris(1-methylethyl)silyl]oxy]methyl]- Pyridine, 5-chloro-2-(chloromethyl)-3-[[[tris(1-methylethyl)silyl]oxy]methyl]- 1456803-67-0 C16H27Cl2NOSi
1928707-64-5 1928707-64-5 1928707-64-5 C14H14FN5O2
3-Phenyl-1H-pyrazole 3-Phenyl-1H-pyrazole 2458-26-6 C9H8N2
1H-Pyrazole-3-carboxamide, 4-[5-[1,5-dihydro-3-[[(2-hydroxyethyl)amino]carbonyl]-5-oxo-1-(tetrahydro-1,1-dioxido-3-thienyl)-4H-pyrazol-4-ylidene]-1,3-pentadien-1-yl]-5-hydroxy-N-(2-hydroxyethyl)-1-(tetrahydro-1,1-dioxido-3-thienyl)-, sodium salt (1:1) 1H-Pyrazole-3-carboxamide, 4-[5-[1,5-dihydro-3-[[(2-hydroxyethyl)amino]carbonyl]-5-oxo-1-(tetrahydro-1,1-dioxido-3-thienyl)-4H-pyrazol-4-ylidene]-1,3-pentadien-1-yl]-5-hydroxy-N-(2-hydroxyethyl)-1-(tetrahydro-1,1-dioxido-3-thienyl)-, sodium salt (1:1) 1020729-05-8 C25H33N6NaO10S2
(S)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole (S)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole
 4-(4-Bromophenyl)-4-piperidinol 4-(4-Bromophenyl)-4-piperidinol 57988-58-6 C11H14BrNO
1,3-Benzenedicarboxylic acid, 5-[(5-pyrimidinylcarbonyl)amino]- 1,3-Benzenedicarboxylic acid, 5-[(5-pyrimidinylcarbonyl)amino]- 1973826-31-1 C13H9N3O5
N-(2-AMINO-4-TRIFLUOROMETHYLPHENYL)PYRROLIDINE N-(2-AMINO-4-TRIFLUOROMETHYLPHENYL)PYRROLIDINE 133184-80-2 C11H13F3N2
Pyridine, 2-(4,5-dihydro-2-oxazolyl)- (9CI) Pyridine, 2-(4,5-dihydro-2-oxazolyl)- (9CI) 119165-69-4 C8H8N2O
2-Pyrimidinemethanamine, 5-ethyl-4,6-dimethyl- 2-Pyrimidinemethanamine, 5-ethyl-4,6-dimethyl- 1340495-16-0 C9H15N3
Thieno[2,3-d]pyrimidine-6-carboxylic acid, 2,4-diamino- (9CI) Thieno[2,3-d]pyrimidine-6-carboxylic acid, 2,4-diamino- (9CI) 155087-28-8 C7H6N4O2S
Pyrimidine, 4-chloro-2-fluoro- (9CI) Pyrimidine, 4-chloro-2-fluoro- (9CI) 51422-00-5 C4H2ClFN2
tert-butyl2-(piperazin-1-yl)ethylcarbamate tert-butyl2-(piperazin-1-yl)ethylcarbamate 112758-89-1 C13H14N2
4-Chloro-6-methyl-2-(2,2,2-trifluoroethyl)-2H-pyrazolo[3,4-d]pyrimidine 4-Chloro-6-methyl-2-(2,2,2-trifluoroethyl)-2H-pyrazolo[3,4-d]pyrimidine 2163771-92-2 C8H6ClF3N4
2-Amino-5-(trifluoromethyl)thieno[2,3-d]pyrimidin-4(1H)-one 2-Amino-5-(trifluoromethyl)thieno[2,3-d]pyrimidin-4(1H)-one 1423165-37-0 C7H4F3N3OS
1-(4-METHYLBENZYL)-1H-BENZIMIDAZOLE-2-CARBALDEHYDE 1-(4-METHYLBENZYL)-1H-BENZIMIDAZOLE-2-CARBALDEHYDE 537010-30-3 C16H14N2O
2-(2-HYDROXYPHENYL)BENZOXAZOLE 2-(2-HYDROXYPHENYL)BENZOXAZOLE 835-64-3 C13H9NO2
2-(2,6-dioxopiperidin-3-yl)-5-(3-(hydroxymethyl)pyrrolidin-1-yl)isoindoline-1,3-dione 2-(2,6-dioxopiperidin-3-yl)-5-(3-(hydroxymethyl)pyrrolidin-1-yl)isoindoline-1,3-dione
2-(1-TRITYL-1H-IMIDAZOL-4-YL)-ETHYLAMINE HYDRATE 2-(1-TRITYL-1H-IMIDAZOL-4-YL)-ETHYLAMINE HYDRATE 195053-92-0 C24H23N3
8-METHYL-IMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLIC ACID 8-METHYL-IMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLIC ACID 88751-05-7 C9H8N2O2
2,2'-Bioxazole, 4,4'-bis(4-fluorophenyl)-4,4',5,5'-tetrahydro-, (4S,4'S)- 2,2'-Bioxazole, 4,4'-bis(4-fluorophenyl)-4,4',5,5'-tetrahydro-, (4S,4'S)- 2567867-99-4 C18H14F2N2O2
1-(4-BROMOBENZYL)-1H-IMIDAZOLE 1-(4-BROMOBENZYL)-1H-IMIDAZOLE 72459-46-2 C10H9BrN2
NA NA 568591-00-4
9-phenyl-1,7-diazabicyclo[4.3.0]nona-2,4,6,8-tetraene 9-phenyl-1,7-diazabicyclo[4.3.0]nona-2,4,6,8-tetraene 92961-15-4 C13H10N2
1-METHYL-4-(TRIFLUOROMETHYL)-1H-IMIDAZOLE-2-CARBOXYLIC ACID 1-METHYL-4-(TRIFLUOROMETHYL)-1H-IMIDAZOLE-2-CARBOXYLIC ACID 1554401-44-3 C6H5F3N2O2
N-BOC-4-Hydroxypiperidine N-BOC-4-Hydroxypiperidine 109384-19-2 C10H19NO3
4,5-DIPHENYL-2-MERCAPTOOXAZOLE 4,5-DIPHENYL-2-MERCAPTOOXAZOLE 6670-13-9 C15H11NOS
(2S,4S)-4-Fluoro-2-(Fluoromethyl)Pyrrolidine Hydrochloride(WX601106) (2S,4S)-4-Fluoro-2-(Fluoromethyl)Pyrrolidine Hydrochloride(WX601106) 1951424-95-5 C5H10ClF2N
2-Bromo-4,5-dichloro-1H-imidazole 2-Bromo-4,5-dichloro-1H-imidazole 16076-27-0 C3HBrCl2N2
TERT-BUTYL 4-CYANO-2,2-DIMETHYL-3-OXOPYRROLIDINE-1-CARBOXYLATE TERT-BUTYL 4-CYANO-2,2-DIMETHYL-3-OXOPYRROLIDINE-1-CARBOXYLATE 718632-42-9 C12H18N2O3
3-(4-NITROPHENYL)PYRAZOLE 3-(4-NITROPHENYL)PYRAZOLE 20583-31-7 C9H7N3O2
3-Nitro-1,2,4-triazole 3-Nitro-1,2,4-triazole 24807-55-4 C2H2N4O2
1-Methyl-1H-imidazole-5-carbonyl chloride hydrochloride 1-Methyl-1H-imidazole-5-carbonyl chloride hydrochloride 343569-06-2 C5H6Cl2N2O
(S)-(+)-2-(ANILINOMETHYL)PYRROLIDINE (S)-(+)-2-(ANILINOMETHYL)PYRROLIDINE 64030-44-0 C11H16N2
1-NITROPYRAZOLE 1-NITROPYRAZOLE 7119-95-1 C3H3N3O2
2-(2-(Pyridin-2-yl)-1H-imidazol-4-yl)ethan-1-amine dihydrochloride 2-(2-(Pyridin-2-yl)-1H-imidazol-4-yl)ethan-1-amine dihydrochloride 56624-07-8 C10H13ClN4
3-(1-Methylpropyl)pyrrolidine 3-(1-Methylpropyl)pyrrolidine 1087748-11-5 C8H17N
6'-Chloro-1'H-spiro[cyclopentane-1,3'-imidazo[1,5-a]pyridine]-1',5'(2'H)-dione 6'-Chloro-1'H-spiro[cyclopentane-1,3'-imidazo[1,5-a]pyridine]-1',5'(2'H)-dione 1849591-70-3 C11H11ClN2O2
7-Bromoimidazo[5,1-f][1,2,4]triazin-4(1H)-one 7-Bromoimidazo[5,1-f][1,2,4]triazin-4(1H)-one 1779924-85-4 C5H3BrN4O
9-(4'-chloro-[1,1'-biphenyl]-3-yl)-9H-carbazole 9-(4'-chloro-[1,1'-biphenyl]-3-yl)-9H-carbazole 2148296-04-0 C24H16ClN
2-AMINO-1-PYRROLIDIN-1-YL-ETHANONE HCL 2-AMINO-1-PYRROLIDIN-1-YL-ETHANONE HCL 35855-14-2 C6H13ClN2O
2,2,2-trifluoroethyl N-[2-(pyrrolidin-1-yl)pyridin-3-yl]carbamate hydrochloride 2,2,2-trifluoroethyl N-[2-(pyrrolidin-1-yl)pyridin-3-yl]carbamate hydrochloride 1311315-79-3 C12H15ClF3N3O2
4-BROMO-3-TRIFLUOROMETHYL-1H-PYRAZOLE 4-BROMO-3-TRIFLUOROMETHYL-1H-PYRAZOLE 19968-17-3 C4H2BrF3N2
(R)-2-(2,5-dichlorophenyl)pyrrolidine hydrochloride (R)-2-(2,5-dichlorophenyl)pyrrolidine hydrochloride 2241594-21-6 C10H12Cl3N
3-Methylpyrrolidine-3-carboxylic acid hydrochloride 3-Methylpyrrolidine-3-carboxylic acid hydrochloride 1222503-25-4 C6H12ClNO2
(S)-Pyrrolidin-2-ylbis(4-(trifluoromethyl)phenyl)methanol hydrochloride (S)-Pyrrolidin-2-ylbis(4-(trifluoromethyl)phenyl)methanol hydrochloride 131180-54-6 C19H18ClF6NO
5-Chloro-7-methoxypyrazolo[1,5-a]pyrimidine 5-Chloro-7-methoxypyrazolo[1,5-a]pyrimidine 1824286-23-8 C7H6ClN3O
5-BROMOURIDINE 5'-TRIPHOSPHATE SODIUM 5-BROMOURIDINE 5'-TRIPHOSPHATE SODIUM 161848-60-8 C9H15BrN2NaO15P3
ANTAZOLINE METHANESULFONATE ANTAZOLINE METHANESULFONATE 3131-32-6 C18H20N3O3S-
5,6-Diamino-1,3-dihydro-2H-benzoimidazol-2-one 5,6-Diamino-1,3-dihydro-2H-benzoimidazol-2-one 55621-49-3 C7H8N4O
3,5-dimethyl-1-(tetrahydro-2H-pyran-4-yl)-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole 3,5-dimethyl-1-(tetrahydro-2H-pyran-4-yl)-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole 2246602-45-7 C16H27BN2O3
(2α,3α,5α,16β,17β)-2,3-Epoxy-16-(1-pyrrolidinyl)androstan-17-ol (2α,3α,5α,16β,17β)-2,3-Epoxy-16-(1-pyrrolidinyl)androstan-17-ol 119302-19-1 C23H37NO2
4-[methylsulfanyl(morpholin-4-yl)phosphoryl]morpholine 4-[methylsulfanyl(morpholin-4-yl)phosphoryl]morpholine 141930-98-5 C9H19N2O3PS
5-(1-methyl-1H-imidazol-2-yl)-1,3,4-thiadiazol-2-amine 5-(1-methyl-1H-imidazol-2-yl)-1,3,4-thiadiazol-2-amine 25306-10-9 C6H7N5S
2,4,6-tris(4-methylpyrazol-1-yl)-1,3,5-triazine 2,4,6-tris(4-methylpyrazol-1-yl)-1,3,5-triazine 154403-26-6 C15H15N9
2-(Bromomethyl)thieno[3,2-d]pyrimidine 2-(Bromomethyl)thieno[3,2-d]pyrimidine 77294-18-9 C7H5BrN2S
6-Bromo-7-ethoxyimidazo[1,2-a]pyridine 6-Bromo-7-ethoxyimidazo[1,2-a]pyridine 2141967-16-8 C9H9BrN2O
Fenoxazoline Fenoxazoline 4846-91-7 C13H18N2O
(2S,4R)-4-fluoro-2-methylpyrrolidine hydrochloride (2S,4R)-4-fluoro-2-methylpyrrolidine hydrochloride 2828444-35-3 C5H11ClFN
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