Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
5-Chloroimidazo[1,2-a]pyridine-2-carboxylic acid 5-Chloroimidazo[1,2-a]pyridine-2-carboxylic acid 1000017-93-5 C8H5ClN2O2
3-Pyrrolidinemethanamine,N-cyclopropyl-4-fluoro-,(3R,4S)-(9CI) 3-Pyrrolidinemethanamine,N-cyclopropyl-4-fluoro-,(3R,4S)-(9CI) 604798-54-1 C8H15FN2
1H-Benzimidazol-5-amine,4-chloro-6-fluoro-(9CI) 1H-Benzimidazol-5-amine,4-chloro-6-fluoro-(9CI) 117275-51-1 C7H5ClFN3
1H-Benzimidazole,2-(2-pyrrolidinyl)-,(R)-(9CI) 1H-Benzimidazole,2-(2-pyrrolidinyl)-,(R)-(9CI) 175530-90-2 C11H13N3
1H-Benzimidazol-2-amine,4,6-dimethyl-(9CI) 1H-Benzimidazol-2-amine,4,6-dimethyl-(9CI) 67469-39-0 C9H11N3
4-PHENYLPYRAZOLE 4-PHENYLPYRAZOLE 10199-68-5 C9H8N2
4-Bromoquinazoline 4-Bromoquinazoline 354574-59-7 C8H5BrN2
1,3-Dimethyl-5-hydroxypyrazole 1,3-Dimethyl-5-hydroxypyrazole 5203-77-0 C5H8N2O
3-Amino-5-cyclobutyl-1H-pyrazole 3-Amino-5-cyclobutyl-1H-pyrazole 326827-21-8 C7H11N3
7-BROMO-2-METHYLQUINAZOLINE 7-BROMO-2-METHYLQUINAZOLINE 552331-87-0 C9H7BrN2
2-Chloro-7-fluoroquinazoline 2-Chloro-7-fluoroquinazoline 956101-10-3 C8H4ClFN2
Cyclopropanecarboxylic acid [4-(4,6-dichloropyrimidin-2-ylsulfanyl)phenyl]amide Cyclopropanecarboxylic acid [4-(4,6-dichloropyrimidin-2-ylsulfanyl)phenyl]amide 639090-53-2 C14H11Cl2N3OS
4-AMINO-3-FORMYLPYRIDINE HCL 4-AMINO-3-FORMYLPYRIDINE HCL 927891-97-2 C6H6N2O·HCl
N-(2,2,2-trifluoroethyl)pyrrolidine-2-carboxamide hydrochloride N-(2,2,2-trifluoroethyl)pyrrolidine-2-carboxamide hydrochloride 1078163-20-8 C7H12ClF3N2O
6-Bromoquinazoline 6-Bromoquinazoline 89892-21-7 C8H5BrN2
2-bromo-3H-imidazo[4,5-c]pyridine 2-bromo-3H-imidazo[4,5-c]pyridine 1557344-85-0 C6H4BrN3
5-(Aminomethyl)-5-(4-fluorophenyl)imidazolidine-2,4-dione hydrochloride 5-(Aminomethyl)-5-(4-fluorophenyl)imidazolidine-2,4-dione hydrochloride 1224885-25-9 C10H11ClFN3O2
4-CHLORO-7-FLUORO-QUINAZOLINE 4-CHLORO-7-FLUORO-QUINAZOLINE 16499-62-0 C8H4ClFN2
3-(Benzo[d][1,3]dioxol-5-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one 3-(Benzo[d][1,3]dioxol-5-yl)-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one 61962-84-3 C13H9N3O3
6'-bromo-8'-chloro-1'H-spiro[cyclobutane-1,3'-imidazo[1,5-a]pyridine]-1',5'(2'H)-dione 6'-bromo-8'-chloro-1'H-spiro[cyclobutane-1,3'-imidazo[1,5-a]pyridine]-1',5'(2'H)-dione 1849592-10-4 C10H8BrClN2O2
7-Methyl-2-(trifluoromethyl)imidazo[1,2-a]pyridine-3-carboxylic acid 7-Methyl-2-(trifluoromethyl)imidazo[1,2-a]pyridine-3-carboxylic acid 874830-65-6 C10H7F3N2O2
Thieno[2,3-d]pyrimidine-6-carbaldehyde Thieno[2,3-d]pyrimidine-6-carbaldehyde 655253-72-8 C7H4N2OS
Benzyl [(1R,2R)-1-Hydroxy-1-phenyl-3-(1-pyrrolidinyl)-2-propanyl]carbamate Benzyl [(1R,2R)-1-Hydroxy-1-phenyl-3-(1-pyrrolidinyl)-2-propanyl]carbamate 193545-67-4 C21H26N2O3
4-BROMO-1-METHYL-3-(TRIFLUOROMETHYL)-1H-PYRAZOLE 4-BROMO-1-METHYL-3-(TRIFLUOROMETHYL)-1H-PYRAZOLE 497832-99-2 C5H4BrF3N2
2-ETHYL-4,4-DIMETHYL-2-OXAZOLINE 2-ETHYL-4,4-DIMETHYL-2-OXAZOLINE 5146-88-3 C7H13NO
1-(4-FLUOROPHENYL)IMIDAZOLINE-2-THIONE 1-(4-FLUOROPHENYL)IMIDAZOLINE-2-THIONE 17452-07-2 C9H7FN2S
3-METHYL-1,2,4-TRIAZOLE-5-THIONE 3-METHYL-1,2,4-TRIAZOLE-5-THIONE 7271-44-5 C3H5N3S
4-CHLORO-2-METHYLTHIOPYRAZOLO[1,5-A]1,3,5-TRIAZINE 4-CHLORO-2-METHYLTHIOPYRAZOLO[1,5-A]1,3,5-TRIAZINE 54346-19-9 C6H5ClN4S
L-CIS-PYRROLIDINE-2,4-DICARBOXYLIC ACID L-CIS-PYRROLIDINE-2,4-DICARBOXYLIC ACID 64927-38-4 C6H9NO4
8-bromo-5-methyl-[1,2,4]triazolo[4,3-a]pyridine 8-bromo-5-methyl-[1,2,4]triazolo[4,3-a]pyridine 1379355-21-1 C7H6BrN3
(1R,2S,3S)-2-ethoxymethyl-3-(3,4-dichlorophenyl)-tropane (1R,2S,3S)-2-ethoxymethyl-3-(3,4-dichlorophenyl)-tropane
1-((1H-pyrazol-1-yl)methyl)-1H-pyrazole 1-((1H-pyrazol-1-yl)methyl)-1H-pyrazole 27258-04-4 C7H8N4
6-(Tert-butylsulfonyl)-3-iodo-7-methoxyimidazo[1,2-a]pyridine 6-(Tert-butylsulfonyl)-3-iodo-7-methoxyimidazo[1,2-a]pyridine 2141961-59-1 C12H15IN2O3S
7-Bromo-4H-pyrazino[1,2-a]pyrimidin-4-one 7-Bromo-4H-pyrazino[1,2-a]pyrimidin-4-one 1848244-17-6 C7H4BrN3O
6-(2,2,2-Trifluoroethyl)thieno[3,2-d]pyrimidin-4(3H)-one 6-(2,2,2-Trifluoroethyl)thieno[3,2-d]pyrimidin-4(3H)-one 2163771-86-4 C8H5F3N2OS
1-tert-Butyl 3-methyl 3-(methylthio)pyrrolidine-1,3-dicarboxylate 1-tert-Butyl 3-methyl 3-(methylthio)pyrrolidine-1,3-dicarboxylate 942190-28-5 C12H21NO4S
(1-(pyrrolidin-1-ylmethyl)cyclopropyl)methanol (1-(pyrrolidin-1-ylmethyl)cyclopropyl)methanol 1174666-14-8 C9H17NO
2-PIPERIDIN-2-YL-1H-BENZOIMIDAZOLE 2-PIPERIDIN-2-YL-1H-BENZOIMIDAZOLE 51785-23-0 C12H15N3
2,6-Bis[(4R)-4-phenyl-2-oxazolinyl]pyridine 2,6-Bis[(4R)-4-phenyl-2-oxazolinyl]pyridine 128249-70-7 C23H19N3O2
3-(2-HYDROXY-5-METHYLPHENYL)PYRAZOLE 3-(2-HYDROXY-5-METHYLPHENYL)PYRAZOLE 57148-86-4 C10H10N2O
1,3-DI-TERT-BUTYLBENZIMIDAZOLIUM CHLORIDE 1,3-DI-TERT-BUTYLBENZIMIDAZOLIUM CHLORIDE 946607-10-9 C15H23ClN2
N-[[(1,2,3,5,6,7-hexahydro-s-indacen-4-yl) amino]carbonyl]-1-(1-methylethyl)-1H-Pyrazole-3-sulfonamide N-[[(1,2,3,5,6,7-hexahydro-s-indacen-4-yl) amino]carbonyl]-1-(1-methylethyl)-1H-Pyrazole-3-sulfonamide 1995067-59-8 C19H24N4O3S
Pyrimidine,5,5'-(1,4-phenylene)bis- Pyrimidine,5,5'-(1,4-phenylene)bis- 174303-53-8 C14H10N4
1,2,4-Triazolo[4,3-c]pyrimidine, 5-chloro-8-iodo- 1,2,4-Triazolo[4,3-c]pyrimidine, 5-chloro-8-iodo- 2374137-45-6 C5 H2 Cl I N4
1H-Benzimidazole, 2-(3,5-dibromophenyl)- 1H-Benzimidazole, 2-(3,5-dibromophenyl)- 1242080-87-0 C13H8Br2N2
(3S,4R)-4-(3-fluorophenyl)-1-(2-methoxyethyl)pyrrolidin-3-aminedihydrochloride (3S,4R)-4-(3-fluorophenyl)-1-(2-methoxyethyl)pyrrolidin-3-aminedihydrochloride 1414567-41-1 C13H20ClFN2O
1-(4-fluoro-2-methylphenyl)pyrrolidine-2,4-dione 1-(4-fluoro-2-methylphenyl)pyrrolidine-2,4-dione 1537294-18-0 C11H10FNO2
AKOS BC-0114 AKOS BC-0114 373824-30-7 C12H18N2O
2H-Benzimidazol-2-one, 4-bromo-7-fluoro-1,3-dihydro- 2H-Benzimidazol-2-one, 4-bromo-7-fluoro-1,3-dihydro- 1388074-82-5 C7H4BrFN2O
1H-Benzimidazole-7-carboxylic acid, 5-bromo-, methyl ester 1H-Benzimidazole-7-carboxylic acid, 5-bromo-, methyl ester 1806517-50-9 C9H7BrN2O2
2-Pyrrolidinone, 3-bromo-1-(1,1-dimethylethyl)- 2-Pyrrolidinone, 3-bromo-1-(1,1-dimethylethyl)- 1343578-30-2 C8H14BrNO
1,1'-((2,3,5,6-tetramethyl-1,4-phenylene)bis(methylene))bis(1H-imidazole) 1,1'-((2,3,5,6-tetramethyl-1,4-phenylene)bis(methylene))bis(1H-imidazole) 1012075-54-5 C18H22N4
4-OXAZOLEMETHANOL, 2-METHYL- 4-OXAZOLEMETHANOL, 2-METHYL- 141567-53-5 C5H7NO2
5-PYRIDIN-3-YLTHIOPHEN-2-AMINE 5-PYRIDIN-3-YLTHIOPHEN-2-AMINE 837376-58-6 C9H8N2S
Tris([2,2'-bipyridine]-4,4'-diamine)ruthenium(II)dichloride Tris([2,2'-bipyridine]-4,4'-diamine)ruthenium(II)dichloride C30H30Cl2N12Ru
Chloro{1,3-bis[2,6-bis(1-methylethyl)phenyl]-1,3-dihydro-4,5-dimethyl-2H-imidazol-2-ylidene}gold(I) Chloro{1,3-bis[2,6-bis(1-methylethyl)phenyl]-1,3-dihydro-4,5-dimethyl-2H-imidazol-2-ylidene}gold(I) 1192141-66-4 C29H41AuClN2-
Pyrimidine, 4,6-dichloro-2-[(1E)-2-phenylethenyl]- Pyrimidine, 4,6-dichloro-2-[(1E)-2-phenylethenyl]- 934353-78-3 C12H8Cl2N2
tetrakis(imidazol-1-ylmethyl)methane tetrakis(imidazol-1-ylmethyl)methane 860026-77-3 C17H20N8
2-iodo-1-p-tolyl-propan-1-one 2-iodo-1-p-tolyl-propan-1-one 236117-38-7 C10H11IO
5-Iodo-1-methyl-1H-pyrazole-4-carbaldehyde 5-Iodo-1-methyl-1H-pyrazole-4-carbaldehyde 1346818-72-1 C5H5IN2O
2-chloro-4-methyl-6-(pyrrolidin-1-yl)pyrimidine 2-chloro-4-methyl-6-(pyrrolidin-1-yl)pyrimidine 425425-25-8 C9H12ClN3
3-Benzyl-5-phenyl-3H-imidazol-4-ylamine 3-Benzyl-5-phenyl-3H-imidazol-4-ylamine 1000932-31-9 C16H15N3
4-CYANOPYRAZOLE 4-CYANOPYRAZOLE 31108-57-3 C4H3N3
1-tert-Butyl 6-ethyl 2,3-dihydro-1H-imidazo[1,2-b]pyrazole-1,6-dicarboxylate 1-tert-Butyl 6-ethyl 2,3-dihydro-1H-imidazo[1,2-b]pyrazole-1,6-dicarboxylate 1820647-54-8 C13H19N3O4
4,6-DICHLORONICOTINONITRILE 4,6-DICHLORONICOTINONITRILE 166526-03-0 C6H2Cl2N2
4-Methyl-1,2,4-triazole-3-thiol 4-Methyl-1,2,4-triazole-3-thiol 24854-43-1 C3H5N3S
5'-O-(4,4'-DIMETHOXYTRITYL)-2'-DEOXYCYTIDINE 5'-O-(4,4'-DIMETHOXYTRITYL)-2'-DEOXYCYTIDINE 76512-82-8 C30H31N3O6
(S)-(3-FLUOROPYRROLIDIN-3-YL)METHANOL (S)-(3-FLUOROPYRROLIDIN-3-YL)METHANOL 2089671-61-2 C5H10FNO
3-PIPERIDINYL(1-PYRROLIDINYL)METHANONE 3-PIPERIDINYL(1-PYRROLIDINYL)METHANONE 35090-94-9 C10H18N2O
1,2-DIMETHYL-4-NITRO-1H-IMIDAZOLE 1,2-DIMETHYL-4-NITRO-1H-IMIDAZOLE 13230-04-1 C5H7N3O2
1-(4-FLUOROPHENYL)-5-PHENYL-1H-PYRAZOLE 1-(4-FLUOROPHENYL)-5-PHENYL-1H-PYRAZOLE 299162-83-7 C15H11FN2
4-(Bromomethyl)-5-phenyl-1,3-oxazole 4-(Bromomethyl)-5-phenyl-1,3-oxazole 368869-94-7 C10H8BrNO
6'-Bromo-4-hydroxy-8'-methyl-2'H-spiro[cyclohexane-1,3'-imidazo[1,5-a]pyridine]-1',5'-dione 6'-Bromo-4-hydroxy-8'-methyl-2'H-spiro[cyclohexane-1,3'-imidazo[1,5-a]pyridine]-1',5'-dione 1849594-08-6 C13H15BrN2O3
6-Chloro-3,3-dimethyl-2,3-dihydroimidazo[1,5-a]pyridine-1,5-dione 6-Chloro-3,3-dimethyl-2,3-dihydroimidazo[1,5-a]pyridine-1,5-dione 1849591-66-7 C9H9ClN2O2
6-Ethyl-2-methylimidazo[2,1-b]thiazole-5-carboxylic acid 6-Ethyl-2-methylimidazo[2,1-b]thiazole-5-carboxylic acid 1131613-58-5 C9H10N2O2S
7-Ethyl-2-methylimidazo[1,2-a]pyridine-3-carboxylic acid 7-Ethyl-2-methylimidazo[1,2-a]pyridine-3-carboxylic acid 1501589-02-1 C11H12N2O2
2,4(1H,3H)-Pyrimidinedione, 1-(4-bromo-3-fluorophenyl)dihydro- 2,4(1H,3H)-Pyrimidinedione, 1-(4-bromo-3-fluorophenyl)dihydro- 1515197-90-6 C10H8BrFN2O2
2,4(1H,3H)-Pyrimidinedione, 1-cyclobutyl- 2,4(1H,3H)-Pyrimidinedione, 1-cyclobutyl- 1797409-28-9 C8H10N2O2
ethyl pyrrolidine-1-propionate ethyl pyrrolidine-1-propionate 6317-35-7 C9H17NO2
1-(tributylstannyl)-1H-imidazole 1-(tributylstannyl)-1H-imidazole 27605-35-2 C15H30N2Sn
5-[(3-ethylnaphth[2,1-d]oxazol-2(3H)-ylidene)ethylidene]-3-heptyl-1-phenyl-2-thioxoimidazolidin-4-one 5-[(3-ethylnaphth[2,1-d]oxazol-2(3H)-ylidene)ethylidene]-3-heptyl-1-phenyl-2-thioxoimidazolidin-4-one 13242-16-5 C31H33N3O2S
Carbamic acid, [(1S)-3-chloro-2-oxo-1-[[(3S)-2-oxo-3-pyrrolidinyl]methyl]propyl]-, 1,1-dimethylethyl ester (9CI) Carbamic acid, [(1S)-3-chloro-2-oxo-1-[[(3S)-2-oxo-3-pyrrolidinyl]methyl]propyl]-, 1,1-dimethylethyl ester (9CI) 870153-92-7 C13H21ClN2O4
1-(2,2-diethoxyethyl)-1H-imidazole 1-(2,2-diethoxyethyl)-1H-imidazole 18999-43-4 C9H16N2O2
3,5-dichloro-2-(trichloromethyl)pyridine 3,5-dichloro-2-(trichloromethyl)pyridine 1128-16-1 C6H2Cl5N
ethyl 4-acetylphenylacetate ethyl 4-acetylphenylacetate 1528-42-3 C12H14O3
Imidazo[1,2-b]pyridazine, 6-chloro-8-fluoro- Imidazo[1,2-b]pyridazine, 6-chloro-8-fluoro- 2306272-97-7 C6H3ClFN3
Uridine 5'-(trihydrogen diphosphate), mono-alpha-d-glucopyranosyl ester, sodium salt Uridine 5'-(trihydrogen diphosphate), mono-alpha-d-glucopyranosyl ester, sodium salt 14656-80-5 C15H25N2NaO17P2
1-(2-chloroethyl)pyrrolidine-2,5-dione 1-(2-chloroethyl)pyrrolidine-2,5-dione 41212-96-8 C6H8ClNO2
4-methylimidazolidin-2-one 4-methylimidazolidin-2-one 6531-31-3 C4H8N2O
6-(Pyrrolidin-1-yl)pyridine-2-carbonitrile 6-(Pyrrolidin-1-yl)pyridine-2-carbonitrile 160017-13-0 C10H11N3
(R)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole hydrochloride (R)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole hydrochloride 2828444-26-2 C7H11ClIN3
Pyrazolo[1,5-a]pyridine-3-carbonitrile, 4-fluoro- (ACI) Pyrazolo[1,5-a]pyridine-3-carbonitrile, 4-fluoro- (ACI) 2106691-83-0 C8H4FN3
endo-N-Phenzyl-endo-3-aminotropane endo-N-Phenzyl-endo-3-aminotropane 36795-88-7 C14H20N2
Thieno[3,2-d]pyrimidine, 4-methoxy-7-methyl- (9CI) Thieno[3,2-d]pyrimidine, 4-methoxy-7-methyl- (9CI) 676549-71-6 C8H8N2OS
Imidazo[1,2-a]pyridine, 3-fluoro-7-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- Imidazo[1,2-a]pyridine, 3-fluoro-7-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- 2259877-52-4 C13H16BFN2O2
Imidazo[1,2-a]pyridine, 7-fluoro-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- Imidazo[1,2-a]pyridine, 7-fluoro-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- 2628351-34-6 C13H16BFN2O2
1-(tert-butyl) 2-methyl (2S,4R)-4-((4,4''-diamino-5'-(4-aminophenyl)-[1,1':3',1''-terphenyl]-4'-yl)methoxy)pyrrolidine-1,2-dicarboxylate 1-(tert-butyl) 2-methyl (2S,4R)-4-((4,4''-diamino-5'-(4-aminophenyl)-[1,1':3',1''-terphenyl]-4'-yl)methoxy)pyrrolidine-1,2-dicarboxylate 2116475-70-6 C36H40N4O5
(4R)-1-BOC-4-METHYL-D-PROLINE
(4R)-1-BOC-4-METHYL-D-PROLINE 871727-77-4 C11H19NO4
3-iodo-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine dihydrochloride 3-iodo-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine dihydrochloride
5-Formylamino-1-(2-formyloxyethyl)pyrazole 5-Formylamino-1-(2-formyloxyethyl)pyrazole C7H9N3O3
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