Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
2,6-Bis[(4S)-phenyl-2-oxazolin-2-yl]pyridine 2,6-Bis[(4S)-phenyl-2-oxazolin-2-yl]pyridine 174500-20-0 C23H19N3O2
4-(2-METHYLIMIDAZOL-1-YLMETHYL)PHENYLAMINE 4-(2-METHYLIMIDAZOL-1-YLMETHYL)PHENYLAMINE 772311-98-5 C11H13N3
ovo/FU ovo/FU
SGC7901/FU SGC7901/FU
5-Ethoxy-3-methyl-1-phenylpyrazole 5-Ethoxy-3-methyl-1-phenylpyrazole 1016-41-7 C12H14N2O
1H-Benzimidazole,1-methyl-6-nitro-(9CI) 1H-Benzimidazole,1-methyl-6-nitro-(9CI) 5381-79-3 C8H7N3O2
3-Pyridinecarboxylicacid,1,4-dihydro-1-methyl-,methylester(9CI) 3-Pyridinecarboxylicacid,1,4-dihydro-1-methyl-,methylester(9CI) 59138-83-9 C8H11NO2
1H-Imidazole-5-carbonitrile,4-amino-1-methyl-(9CI) 1H-Imidazole-5-carbonitrile,4-amino-1-methyl-(9CI) 40637-80-7 C5H6N4
1H-Pyrazole,3-bromo-1-methyl-(9CI) 1H-Pyrazole,3-bromo-1-methyl-(9CI) 151049-87-5 C4H5BrN2
3-(4-fluorobenzoyl)tropane 3-(4-fluorobenzoyl)tropane 96920-56-8 C15H18FNO
3,4,5-Tribromopyrazole 3,4,5-Tribromopyrazole 17635-44-8 C3HBr3N2
6-BROMOIMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLIC ACID 6-BROMOIMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLIC ACID 749849-14-7 C8H5BrN2O2
1-Tritylpyrazole 1-Tritylpyrazole 95163-43-2 C22H18N2
4-HYDRAZINOPYRIDINE dihydrochloride 4-HYDRAZINOPYRIDINE dihydrochloride C5H9Cl2N3
2-(tert-butoxycarbonylamino)pyridine-5-boronic acid, pinacol ester 2-(tert-butoxycarbonylamino)pyridine-5-boronic acid, pinacol ester 910462-31-6 C16H25BN2O4
6-CHLORO-1,3-DIHYDRO-2H-IMIDAZO[4,5-B]PYRIDINE-2-THIONE 6-CHLORO-1,3-DIHYDRO-2H-IMIDAZO[4,5-B]PYRIDINE-2-THIONE 19918-37-7 C6H4ClN3S
3-ACETYL-2-METHYLIMIDAZO[1,2-A]PYRIDINE 3-ACETYL-2-METHYLIMIDAZO[1,2-A]PYRIDINE 29096-60-4 C10H10N2O
2,4,7-TRICHLOROQUINAZOLINE 2,4,7-TRICHLOROQUINAZOLINE 6625-94-1 C8H3Cl3N2
2-METHYL-2-PYRROLIDIN-1-YLPROPAN-1-OL 2-METHYL-2-PYRROLIDIN-1-YLPROPAN-1-OL 101258-96-2 C8H17NO
1-(2-bromoethyl)pyrrolidine-2,5-dione 1-(2-bromoethyl)pyrrolidine-2,5-dione 55943-72-1 C6H8BrNO2
3-chloro-2-methoxybenzoic acid 3-chloro-2-methoxybenzoic acid 3260-93-3 C8H7ClO3
IMIDAZO[1,2-A]PYRIDIN-2-AMINE, 7-BROMO- IMIDAZO[1,2-A]PYRIDIN-2-AMINE, 7-BROMO- 865604-33-7 C7H6BrN3
ethyl 6-iodoH-imidazo[1,2-a]pyridine-2-carboxylate ethyl 6-iodoH-imidazo[1,2-a]pyridine-2-carboxylate 214958-32-4 C10H9IN2O2
2-(4-FLUORO-PHENYL)-IMIDAZO[1,2-A]PYRIDINE-3-CARBALDEHYDE 2-(4-FLUORO-PHENYL)-IMIDAZO[1,2-A]PYRIDINE-3-CARBALDEHYDE 425658-37-3 C14H9FN2O
2,3-Dibromo-4-(trifluoromethyl)pyridine 2,3-Dibromo-4-(trifluoromethyl)pyridine 1099598-01-2 C6H2Br2F3N
(R)-1-BENZYL-PYRROLIDINE-3-CARBOXYLIC ACID (R)-1-BENZYL-PYRROLIDINE-3-CARBOXYLIC ACID 1082055-65-9 C12H15NO2
3-(4-AMINO-PHENYL)-PYRROLIDINE-2,5-DIONE 3-(4-AMINO-PHENYL)-PYRROLIDINE-2,5-DIONE 32856-49-8 C10H10N2O2
4-(HYDROXYMETHYL)-1-METHYLPYRROLIDIN-2-ONE 4-(HYDROXYMETHYL)-1-METHYLPYRROLIDIN-2-ONE 59887-20-6 C6H11NO2
4-CHLORO-5-IODO-7-METHYL-7H-PYRROLO[2,3-D]PYRIMIDINE 4-CHLORO-5-IODO-7-METHYL-7H-PYRROLO[2,3-D]PYRIMIDINE 833481-37-1 C7H5ClIN3
7-BROMO-1,5-DIHYDRO-4H-PYRROLO[3,2-D]PYRIMIDIN-4-ONE 7-BROMO-1,5-DIHYDRO-4H-PYRROLO[3,2-D]PYRIMIDIN-4-ONE 93587-23-6 C6H4BrN3O
4-BROMO-2-METHYL-1H-BENZIMIDAZOLE 4-BROMO-2-METHYL-1H-BENZIMIDAZOLE 20223-87-4 C8H7BrN2
1-(METHOXYETHYL)-1-METHYLPYRROLIDINIUM BIS(TRIFLUOROMETHYLSULFONYL)IMIDE 1-(METHOXYETHYL)-1-METHYLPYRROLIDINIUM BIS(TRIFLUOROMETHYLSULFONYL)IMIDE 757240-24-7 C8H18NO.C2F6NO4S2
Ethyl 4-chlorothieno[2,3-d]pyrimidine-2-carboxylate Ethyl 4-chlorothieno[2,3-d]pyrimidine-2-carboxylate 1192540-11-6 C9H7ClN2O2S
4-Chloro-6-methyl-1H-pyrazolo[3,4-d]pyrimidine 4-Chloro-6-methyl-1H-pyrazolo[3,4-d]pyrimidine 30129-53-4 C6H5ClN4
(3S,4R)-1-(tert-butoxycarbonyl)-4-(4-(trifluoromethyl)phenyl)pyrrolidine-3-carboxylic acid (3S,4R)-1-(tert-butoxycarbonyl)-4-(4-(trifluoromethyl)phenyl)pyrrolidine-3-carboxylic acid 955137-85-6 C17H20F3NO4
3-Tert-Butyl-1H-Pyrazol-4-carbaldehyde 3-Tert-Butyl-1H-Pyrazol-4-carbaldehyde 1001020-17-2 C8H12N2O
5-BROMO-2-CHLORO-BENZOXAZOLE 5-BROMO-2-CHLORO-BENZOXAZOLE 1030377-54-8 C7H3BrClNO
4-Methoxy-2-(trifluoromethyl)pyridine 4-Methoxy-2-(trifluoromethyl)pyridine 1065103-97-0 C7H6F3NO
3-bromo-5-fluoroimidazo[1,2-a]pyridine 3-bromo-5-fluoroimidazo[1,2-a]pyridine 1388711-44-1 C7H4BrFN2
1-(3-Bromo-4-methylphenyl)pyrrolidin-2-one 1-(3-Bromo-4-methylphenyl)pyrrolidin-2-one 1226225-33-7 C11H12BrNO
2-Bromomethyl-oxazole 2-Bromomethyl-oxazole 1065073-35-9 C4H4BrNO
1-N-acetyluracil 1-N-acetyluracil 40338-28-1 C6H6N2O3
7-AMINO-4(1H)-QUINAZOLINONE 7-AMINO-4(1H)-QUINAZOLINONE 90004-09-4 C8H7N3O
3-(1-Methyl-5-imidazolyl)benzoic Acid 3-(1-Methyl-5-imidazolyl)benzoic Acid 1261269-06-0 C11H10N2O2
ethyl 1-benzyl-1H-iMidazole-2-carboxylate ethyl 1-benzyl-1H-iMidazole-2-carboxylate 865998-45-4 C13H14N2O2
4-Chloro-5-iodo-6-methylpyrimidin-2-amine 4-Chloro-5-iodo-6-methylpyrimidin-2-amine 897030-99-8 C5H5ClIN3
thieno[3,2-d]pyriMidine-7-carboxylic acid thieno[3,2-d]pyriMidine-7-carboxylic acid 1211596-20-1 C7H4N2O2S
1H-Benzo[d]imidazol-6-ylboronic acid 1H-Benzo[d]imidazol-6-ylboronic acid 1228183-22-9 C7H7BN2O2
2,3-Dichlorotetrahydrofuran 2,3-Dichlorotetrahydrofuran 3511-19-1 C4H6Cl2O
IMidazo[1,2-a]pyridine-2-carboxylic acid, 7-chloro-, ethyl ester IMidazo[1,2-a]pyridine-2-carboxylic acid, 7-chloro-, ethyl ester 1204501-38-1 C10H9ClN2O2
IMidazo[1,2-a]pyridine-6-carboxylic acid, 2-Methyl- IMidazo[1,2-a]pyridine-6-carboxylic acid, 2-Methyl- 129912-22-7 C9H8N2O2
(R)-1-acetyl-2-PyrrolidineMethanol (R)-1-acetyl-2-PyrrolidineMethanol 123958-87-2 C7H13NO2
3-d]pyriMidine-6-carboxylic acid 3-d]pyriMidine-6-carboxylic acid 873544-81-1 C7H5N3O3S
2-a]pyrazine 2-a]pyrazine 91775-61-0 C7H6BrN3O
3H-IMidazo[4,5-c]pyridine, 2-(2-fluorophenyl)- 3H-IMidazo[4,5-c]pyridine, 2-(2-fluorophenyl)- 89075-43-4 C12H8FN3
7-Chloropyrazolo[1,5-a]pyiMidine-3-carbonitrile 7-Chloropyrazolo[1,5-a]pyiMidine-3-carbonitrile 1159982-97-4 C7H3ClN4
4-ChloroMethyl-1H-pyrrolo[2,3-b]pyridine 4-ChloroMethyl-1H-pyrrolo[2,3-b]pyridine 1268390-67-5 C8H7ClN2
4,7-dibroMobenzo[1,2-c:4,5-c']bis([1,2,5]thiadiazole) 4,7-dibroMobenzo[1,2-c:4,5-c']bis([1,2,5]thiadiazole) 165617-59-4 C6Br2N4S2
5,6,7,8-tetrahydroiMidazo[1,2-a]pyridin-6-ol 5,6,7,8-tetrahydroiMidazo[1,2-a]pyridin-6-ol 1100750-16-0 C7H10N2O
5-broMo-2-(3-(chloroMethyl)phenyl)pyriMidine 5-broMo-2-(3-(chloroMethyl)phenyl)pyriMidine 1100598-50-2 C11H8BrClN2
4-MethylpyriMidine-2-carboxaMide 4-MethylpyriMidine-2-carboxaMide 1330754-32-9 C6H7N3O
L-Proline, N-[(1,1-diMethylethoxy)carbonyl]glycyl-4-(benzoylaMino)-, (4R)- L-Proline, N-[(1,1-diMethylethoxy)carbonyl]glycyl-4-(benzoylaMino)-, (4R)- 943134-34-7 C19H25N3O6
7-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-[1,2,4]triazolo[1,5-a]pyridine 7-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-[1,2,4]triazolo[1,5-a]pyridine 1210048-18-2 C12H16BN3O2
7-BroMo-3-iodo-iMidazo[1,2-a]pyridine 7-BroMo-3-iodo-iMidazo[1,2-a]pyridine 1246184-55-3 C7H4BrIN2
5-(hydroxyMethyl)-1-Methylpyrrolidin-2-one 5-(hydroxyMethyl)-1-Methylpyrrolidin-2-one 89531-41-9 C6H11NO2
1-(3-Methyl-4-nitrophenyl)-1H-imidazole 1-(3-Methyl-4-nitrophenyl)-1H-imidazole 102791-92-4 C10H9N3O2
3-AMino-1-Boc-4,4-difluoropyrrolidine 3-AMino-1-Boc-4,4-difluoropyrrolidine 1408074-83-8 C9H16F2N2O2
MFCD00222735 MFCD00222735 3920-42-1 C5H7N3O2
methyl 1-benzylpyrrolidine-3-carboxylate methyl 1-benzylpyrrolidine-3-carboxylate 126344-02-3 C13H17NO2
3,4-Diiodo-5-methyl-1H-pyrazole 3,4-Diiodo-5-methyl-1H-pyrazole 6715-87-3 C4H4I2N2
2,4-dichlorobenzofuro[3,2-d]pyrimidine 2,4-dichlorobenzofuro[3,2-d]pyrimidine 160199-95-1 C10H4Cl2N2O
2-Acetyl-pyrrolidine hydrochloride 2-Acetyl-pyrrolidine hydrochloride 1956365-22-2 C6H12ClNO
5-Pyrimidinecarbonitrile, 2,4-diamino-6-chloro- 5-Pyrimidinecarbonitrile, 2,4-diamino-6-chloro- 900456-21-5 C5H4ClN5
1-(Propyltrimethoxyl)-3-methylimidazolium chloride 1-(Propyltrimethoxyl)-3-methylimidazolium chloride 856925-70-7 C10H19ClN2O3
(1-Methyl-1H-pyrazol-5-yl)tributylstannane (1-Methyl-1H-pyrazol-5-yl)tributylstannane 170682-50-5 C16H32N2Sn
3-(Bromomethyl)-5-methylisoxazole 3-(Bromomethyl)-5-methylisoxazole 130628-75-0 C5H6BrNO
2-(2-Chloroethyl)-1-methyl-1H-imidazole hydrochloride 2-(2-Chloroethyl)-1-methyl-1H-imidazole hydrochloride 1390654-72-4 C6H10Cl2N2
2-Methyl-4-isothiazolin-3-one hydrochloride 2-Methyl-4-isothiazolin-3-one hydrochloride 26172-54-3 C4H6ClNOS
1-tert-butyl 2-methyl (2S)-3,3-dimethyl-4-oxopyrrolidine-1,2-dicarboxylate 1-tert-butyl 2-methyl (2S)-3,3-dimethyl-4-oxopyrrolidine-1,2-dicarboxylate 478698-30-5 C13H21NO5
4-bromo-1H,2H,3H-pyrrolo[2,3-b]pyridine 4-bromo-1H,2H,3H-pyrrolo[2,3-b]pyridine 1393534-35-4 C7H7BrN2
2-(bromo(phenyl)methyl)pyridine 2-(bromo(phenyl)methyl)pyridine 1073477-82-3 C12H10BrN
1-(3-Bromo-4-methylbenzyl)pyrrolidine 1-(3-Bromo-4-methylbenzyl)pyrrolidine 1414870-50-0 C12H16BrN
5-Bromo-2-methylpyrazolo[1,5-a]pyrimidine 5-Bromo-2-methylpyrazolo[1,5-a]pyrimidine 1610021-32-3 C7H6BrN3
4-BROMO-1-PHENYL-1H-PYRAZOLE 4-BROMO-1-PHENYL-1H-PYRAZOLE 15115-52-3 C9H7BrN2
2-ethyl-2,3-dihydro-2-(1H-imidazol-5-yl)-1H-Inden-1-one 2-ethyl-2,3-dihydro-2-(1H-imidazol-5-yl)-1H-Inden-1-one 104054-82-2 C14H14N2O
6-Bromo-5-methoxy-3H-imidazo[4,5-b]pyridine 6-Bromo-5-methoxy-3H-imidazo[4,5-b]pyridine 2708194-57-2 C7H6BrN3O
Phosphinic acid, di-4-morpholinyl-, butyl ester (9CI) Phosphinic acid, di-4-morpholinyl-, butyl ester (9CI) 5326-05-6 C12H25N2O4P
N-ACETOACETYLMORPHOLINE N-ACETOACETYLMORPHOLINE 16695-54-8 C8H13NO3
2-chloro-4-phenylbenzo[h]quinazoline 2-chloro-4-phenylbenzo[h]quinazoline 4786-80-5 C18H11ClN2
Alkyne NHS ester (hexynoic acid NHS ester) Alkyne NHS ester (hexynoic acid NHS ester) 906564-59-8 C10H11NO4
1-Ethyl-3-methylimidazolium Tricyanomethanide 1-Ethyl-3-methylimidazolium Tricyanomethanide 666823-18-3 C10H11N5
4,4',4'',4'''-(2,2',4,4',6,6'-hexamethyl-[1,1'-biphenyl]-3,3',5,5'-tetrayl)tetrapyridine 4,4',4'',4'''-(2,2',4,4',6,6'-hexamethyl-[1,1'-biphenyl]-3,3',5,5'-tetrayl)tetrapyridine 809274-33-7 C38H34N4
5-(bromomethyl)-1-methyl-4-nitro-1H-imidazole 5-(bromomethyl)-1-methyl-4-nitro-1H-imidazole 1017279-02-5 C5H6BrN3O2
6-CHLOROIMIDAZO[2,1-B]THIAZOLE 6-CHLOROIMIDAZO[2,1-B]THIAZOLE 23576-81-0 C5H3ClN2S
2-AMINO-4-BROMOTHIAZOLE 2-AMINO-4-BROMOTHIAZOLE 502145-18-8 C3H3BrN2S
4-CHLORO-QUINAZOLINE 4-CHLORO-QUINAZOLINE 5190-68-1 C8H5ClN2
7-CHLOROPYRIDO[3,2-D]PYRIMIDIN-4(3H)-ONE 7-CHLOROPYRIDO[3,2-D]PYRIMIDIN-4(3H)-ONE 897360-16-6 C7H4ClN3O
(S)-(+)-2-(AMINOMETHYL)PYRROLIDINE (S)-(+)-2-(AMINOMETHYL)PYRROLIDINE 69500-64-7 C5H12N2
2,5-dioxopyrrolidin-1-yl 5-{2-oxo-hexahydro-1H-thieno[3,4-d]imidazol-4-yl}pentanoate 2,5-dioxopyrrolidin-1-yl 5-{2-oxo-hexahydro-1H-thieno[3,4-d]imidazol-4-yl}pentanoate 85718-04-3 C14H19N3O5S
2-(4,5-dimethyl-2-thienyl)pyrrolidine 2-(4,5-dimethyl-2-thienyl)pyrrolidine 1018163-24-0 C10H15NS
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