Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
Ethyl 2,4-dioxohexahydropyrimidine-5-carboxylate Ethyl 2,4-dioxohexahydropyrimidine-5-carboxylate 1428760-91-1 C7H10N2O4
N-[5-(4-bromophenyl)-6-chloro-4-pyrimidinyl]-N'-benzyl-sulfamide N-[5-(4-bromophenyl)-6-chloro-4-pyrimidinyl]-N'-benzyl-sulfamide 441797-42-8 C17H14BrClN4O2S
2-Azetidinemethanamine 2-Azetidinemethanamine 103550-76-1 C4H10N2
2-((S)-1-acryloyl-4-(7-(8-methylnaphthalen-1-yl)-2-(((S)-1-methylpyrrolidin-2-yl)methoxy)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl)piperazin-2-yl)acetonitrile 2-((S)-1-acryloyl-4-(7-(8-methylnaphthalen-1-yl)-2-(((S)-1-methylpyrrolidin-2-yl)methoxy)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl)piperazin-2-yl)acetonitrile 2206736-04-9 C33H39N7O2
1-PHENYL-3-(TRIFLUOROMETHYL)PYRAZOLE 1-PHENYL-3-(TRIFLUOROMETHYL)PYRAZOLE 99498-65-4 C10H7F3N2
Tris-2,4,6-(2-pyrimidyl)-1,3,5-triazine Tris-2,4,6-(2-pyrimidyl)-1,3,5-triazine 60681-68-7 C15H9N9
4,5-DIMETHYL-1H-IMIDAZOLE-2-THIOL 4,5-DIMETHYL-1H-IMIDAZOLE-2-THIOL 1192-72-9 C5H8N2S
(2S,5S)-5-methylpyrrolidine-2-carboxylic acid hydrochloride (2S,5S)-5-methylpyrrolidine-2-carboxylic acid hydrochloride 38228-14-7 C6H12ClNO2
[2-[(3R,4S)-4-ethyl-1-[(phenylmethoxy)carbonyl]-3-pyrrolidinyl]-2-oxoethyl]dimethyl-Sulfoxonium inner salt [2-[(3R,4S)-4-ethyl-1-[(phenylmethoxy)carbonyl]-3-pyrrolidinyl]-2-oxoethyl]dimethyl-Sulfoxonium inner salt 2050038-78-1 C18H25NO4S
6-amino-1-((2S,4R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-hydroxypyrrolidin-1-yl)hexan-1-one 6-amino-1-((2S,4R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-hydroxypyrrolidin-1-yl)hexan-1-one
5H-indeno[1,2-b]pyridine 5H-indeno[1,2-b]pyridine 244-99-5 C12H9N
N,N-dimethylthio-2-thioxoimidazolidine-1-carboxamide N,N-dimethylthio-2-thioxoimidazolidine-1-carboxamide 935-75-1 C6H11N3OS3
2-(pyrrolidinyl)pyrimidin-4-amine 2-(pyrrolidinyl)pyrimidin-4-amine 33851-99-9 C8H12N4
2,5-Bis(octyldithio)-1,3,4-thiadiazole 2,5-Bis(octyldithio)-1,3,4-thiadiazole 13539-13-4 C18H34N2S5
4,5-dihydro-2-vinyl-1H-imidazole 4,5-dihydro-2-vinyl-1H-imidazole 10577-96-5 C5H8N2
4-(2,5-dibutoxy-4-nitrophenyl)morpholine 4-(2,5-dibutoxy-4-nitrophenyl)morpholine 86-15-7 C18H28N2O5
2,6-Pyridinedicarboxamide, N2,N6-bis[(diethylamino)thioxomethyl]- 2,6-Pyridinedicarboxamide, N2,N6-bis[(diethylamino)thioxomethyl]- 320408-75-1 C17H25N5O2S2
L-Proline, 1-(2-naphthalenylacetyl)- (9CI) L-Proline, 1-(2-naphthalenylacetyl)- (9CI) 130654-11-4 C17H17NO3
5-bromo-6-chloro-1H-pyrazolo[3,4-b]pyridine 5-bromo-6-chloro-1H-pyrazolo[3,4-b]pyridine 1784380-03-5 C6H3BrClN3
3-Hydroxymethylpyrrolidine 3-Hydroxymethylpyrrolidine 5082-74-6 C5H11NO
(1S,2S)-1,2-diphenyl-1-Pyrrolidineethanamine (1S,2S)-1,2-diphenyl-1-Pyrrolidineethanamine 1416133-22-6 C18H22N2
(R)-4-BENZYL-1,3-THIAZOLIDINE-2-THIONE (R)-4-BENZYL-1,3-THIAZOLIDINE-2-THIONE 110199-17-2 C10H11NS2
cis-1-(tert-butoxycarbonyl)-4-ethylpyrrolidine-3-carboxylic acid cis-1-(tert-butoxycarbonyl)-4-ethylpyrrolidine-3-carboxylic acid 1310731-87-3 C12H21NO4
1,5-Diazabicyclo[4.3.0]non-5-ene 1,5-Diazabicyclo[4.3.0]non-5-ene 3001-72-7 C7H12N2
THYMINE-METHYL-D3-6-D THYMINE-METHYL-D3-6-D 156054-85-2 C5H2D4N2O2
Tolytriazole sodium salt Tolytriazole sodium salt 64665-57-2 C7H6N3Na
1-(4-Nitrobenzyl)-1H-imidazole 1-(4-Nitrobenzyl)-1H-imidazole 18994-90-6 C10H9N3O2
(2-METHYLIMIDAZO[1,2-A]PYRIDIN-3-YL)METHANOL (2-METHYLIMIDAZO[1,2-A]PYRIDIN-3-YL)METHANOL 30489-44-2 C9H10N2O
ETHYL IMIDAZO[2,1-B][1,3]BENZOTHIAZOLE-2-CARBOXYLATE ETHYL IMIDAZO[2,1-B][1,3]BENZOTHIAZOLE-2-CARBOXYLATE 64951-05-9 C12H10N2O2S
BENZOTRIAZOLE, SODIUM SALT BENZOTRIAZOLE, SODIUM SALT 15217-42-2 C6H6N3Na
8-NITROIMIDAZO[1,2-A]PYRIDINE 8-NITROIMIDAZO[1,2-A]PYRIDINE 52310-46-0 C7H5N3O2
2,5-Dimethoxytetrahydrofuran 2,5-Dimethoxytetrahydrofuran 696-59-3 C6H12O3
5-CHLORO-1,3-DIMETHYLPYRAZOLE 5-CHLORO-1,3-DIMETHYLPYRAZOLE 54454-10-3 C5H7ClN2
2,3,3-Trimethylindolenine 2,3,3-Trimethylindolenine 1640-39-7 C11H13N
5,5'-(5-aminopyrimidine-4,6-diyl)diisophthalic acid 5,5'-(5-aminopyrimidine-4,6-diyl)diisophthalic acid 1980832-02-7 C20H13N3O8
1-(2,3-dihydrobenzo[b][1,4]dioxin-6-yl-2,2,3,3-d4)-2-(octylamino)-3-(pyrrolidin-1-yl)propan-1-ol 1-(2,3-dihydrobenzo[b][1,4]dioxin-6-yl-2,2,3,3-d4)-2-(octylamino)-3-(pyrrolidin-1-yl)propan-1-ol
4,4'-bis(4-methyl-1H-imidazol-1-yl)-1,1'-biphenyl 4,4'-bis(4-methyl-1H-imidazol-1-yl)-1,1'-biphenyl 1789726-52-8 C20H18N4
1H-Imidazole-2-carboxylic acid, 1-(1-methylethyl)-, ethyl ester 1H-Imidazole-2-carboxylic acid, 1-(1-methylethyl)-, ethyl ester 2017188-77-9 C9H14N2O2
Ethanol, 2-[[(3aR,4S,6R,6aS)-6-[7-[[(1R,2S)-2-(3,4-difluorophenyl)cyclopropyl]amino]-5-(propylsulfonyl)-3H-1,2,3-triazolo[4,5-d]pyrimidin-3-yl]tetrahydro-2,2-dimethyl-4H-cyclopenta-1,3-dioxol-4-yl]oxy]- Ethanol, 2-[[(3aR,4S,6R,6aS)-6-[7-[[(1R,2S)-2-(3,4-difluorophenyl)cyclopropyl]amino]-5-(propylsulfonyl)-3H-1,2,3-triazolo[4,5-d]pyrimidin-3-yl]tetrahydro-2,2-dimethyl-4H-cyclopenta-1,3-dioxol-4-yl]oxy]- 1863036-51-4 C26H32F2N6O6S
Pyrrolidine, 3-(4-chlorophenyl)-3-methyl- Pyrrolidine, 3-(4-chlorophenyl)-3-methyl- 1250837-90-1 C11H14ClN
4-CHLORO-2-HYDROXYQUINOLINE 4-CHLORO-2-HYDROXYQUINOLINE 20146-59-2 C9H6ClNO
3H-Imidazo[4,5-c]pyridine-3,5,6(4H)-tricarboxylic acid, 6,7-dihydro-, 3,5-bis(1,1-dimethylethyl) ester, (6S)- 3H-Imidazo[4,5-c]pyridine-3,5,6(4H)-tricarboxylic acid, 6,7-dihydro-, 3,5-bis(1,1-dimethylethyl) ester, (6S)- 1415602-89-9 C17H25N3O6
Pyrimidine, 5-bromo-4-(difluoromethyl)- Pyrimidine, 5-bromo-4-(difluoromethyl)- 1780524-96-0 C5H3BrF2N2
5-isopropyluracil 5-isopropyluracil 17432-95-0 C7H10N2O2
Piperazine, 1-(bromoacetyl)-4-methyl- (9CI) Piperazine, 1-(bromoacetyl)-4-methyl- (9CI) 112257-15-5 C7H13BrN2O
Pyridine, 4-ethyl-3-fluoro- (9CI) Pyridine, 4-ethyl-3-fluoro- (9CI) 137234-73-2 C7H8FN
(2R,4R)-4-fluoro-2-methylpyrrolidine (2R,4R)-4-fluoro-2-methylpyrrolidine
Formamide, N-1H-benzimidazol-4-yl- (9CI) Formamide, N-1H-benzimidazol-4-yl- (9CI) 137654-47-8 C8H7N3O
(2S,4S)-4-fluoro-2-methylpyrrolidine hydrochloride (2S,4S)-4-fluoro-2-methylpyrrolidine hydrochloride 2828444-34-2 C5H11ClFN
2-pyridin-2-ylpyrimidine-5-carboxylic acid 2-pyridin-2-ylpyrimidine-5-carboxylic acid 933988-22-8 C10H7N3O2
Pyrimidine, 5-(bromomethyl)-2-(trifluoromethyl)- (9CI) Pyrimidine, 5-(bromomethyl)-2-(trifluoromethyl)- (9CI) 198404-35-2 C6H4BrF3N2
2,5-Dimethyl-1H-imidazole-4-carboxaldehyde 2,5-Dimethyl-1H-imidazole-4-carboxaldehyde 68282-52-0 C6H8N2O
2-triisopropylsilyl oxazole 2-triisopropylsilyl oxazole 433332-27-5 C12H23NOSi
Domazoline Domazoline 6043-01-2 C14H20N2O2
3-(TRIFLUOROMETHYL)-5-P-TOLYL-1H-PYRAZOLE 3-(TRIFLUOROMETHYL)-5-P-TOLYL-1H-PYRAZOLE 26974-15-2 C11H9F3N2
5-Methyl-5-veratrylhydantoin 5-Methyl-5-veratrylhydantoin 892-02-4 C13H16N2O4
QUINAZOLINE, 4-CHLORO-6-FLUORO-2-(TRIFLUOROMETHYL)- QUINAZOLINE, 4-CHLORO-6-FLUORO-2-(TRIFLUOROMETHYL)- 959238-11-0 C9H3ClF4N2
1-benzoylpyrrolidin-2-one 1-benzoylpyrrolidin-2-one 2399-66-8 C11H11NO2
4,6-DICHLORO-2-PYRROLIDIN-1-YL-PYRIMIDINE 4,6-DICHLORO-2-PYRROLIDIN-1-YL-PYRIMIDINE 154117-91-6 C8H9Cl2N3
3-(1-methylethyl)-pyrazole 3-(1-methylethyl)-pyrazole 49633-25-2 C6H10N2
1-(3S)-3-Pyrrolidinyl-piperidine 1-(3S)-3-Pyrrolidinyl-piperidine 917560-78-2 C9H18N2
2-bromo-5-phenyl-1,3-oxazole 2-bromo-5-phenyl-1,3-oxazole 129053-70-9 C9H6BrNO
3-Aminopyrrolidin-2-one hydrochloride 3-Aminopyrrolidin-2-one hydrochloride 117879-49-9 C4H8N2O.ClH
2,5-DIPHENYLFURAN 2,5-DIPHENYLFURAN 955-83-9 C16H12O
5,7-dimethylpyrazolo[1,5-a]pyrimidine-3-carbonitrile 5,7-dimethylpyrazolo[1,5-a]pyrimidine-3-carbonitrile 43024-16-4 C9H8N4
1H-1,2,3-TRIAZOLE, 4-BROMO-1-METHYL- 1H-1,2,3-TRIAZOLE, 4-BROMO-1-METHYL- 13273-53-5 C3H4BrN3
4-METHYL-1H-1,2,3-TRIAZOLE 4-METHYL-1H-1,2,3-TRIAZOLE 27808-16-8 C3H5N3
4-Amino-8-bromo-2-chloroquinazoline 4-Amino-8-bromo-2-chloroquinazoline 956100-62-2 C8H5BrClN3
Ethyl 3-amino-6-(trifluoromethyl)imidazo-[1,2-a]pyridine-2-carboxylate Ethyl 3-amino-6-(trifluoromethyl)imidazo-[1,2-a]pyridine-2-carboxylate 1171919-18-8 C11H10F3N3O2
(2S,4R)-1-Boc-2-cyano-4-hydroxypyrrolidine (2S,4R)-1-Boc-2-cyano-4-hydroxypyrrolidine 483366-12-7 C10H16N2O3
(S)-tert-butyl 2-(1H-imidazol-2-yl)pyrrolidine-1-carboxylate (S)-tert-butyl 2-(1H-imidazol-2-yl)pyrrolidine-1-carboxylate 1007882-58-7 C12H19N3O2
4-bromooxazole 4-bromooxazole 1240598-57-5 C3H2BrNO
(S)-2-[(Diphenylphosphino)methyl]pyrrolidine, min. 97% (S)-2-[(Diphenylphosphino)methyl]pyrrolidine, min. 97% 60261-46-3 C17H20NP
7-chloro-2-(chloromethyl)-4H-pyrido[1,2-a]pyrimidin-4-one(SALTDATA: FREE) 7-chloro-2-(chloromethyl)-4H-pyrido[1,2-a]pyrimidin-4-one(SALTDATA: FREE) 162469-87-6 C9H6Cl2N2O
1,3-Dicyclohexylbenzimidazolium chloride, min. 97% 1,3-Dicyclohexylbenzimidazolium chloride, min. 97% 1034449-15-4 C19H27ClN2
3-cyclopropyl-1H-1,2,4-triazole(SALTDATA: FREE) 3-cyclopropyl-1H-1,2,4-triazole(SALTDATA: FREE) 1211390-33-8 C5H7N3
1-Cyclopropyl-6-fluoro-1,4-dihydro-8-methoxy-7-[(4aR,7aR)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-3-quinolinecarboxylic acid 1-Cyclopropyl-6-fluoro-1,4-dihydro-8-methoxy-7-[(4aR,7aR)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-3-quinolinecarboxylic acid 268545-13-7 C21H24FN3O4
5-Ethyl-3-(pyrrolidin-3-ylmethoxymethyl)-[1,2,4]oxadiazole 5-Ethyl-3-(pyrrolidin-3-ylmethoxymethyl)-[1,2,4]oxadiazole 914299-45-9 C10H17N3O2
Pyrrolidine, 2-(2-hydrazinylethyl)-1-methyl-, hydrochloride (1:1) Pyrrolidine, 2-(2-hydrazinylethyl)-1-methyl-, hydrochloride (1:1) 1269292-40-1 C7H18ClN3
1,2,4-triazole potassium salt 1,2,4-triazole potassium salt C2H2KN3
1-(diethoxyMethyl)-4,5-diMethyl-1H-iMidazole 1-(diethoxyMethyl)-4,5-diMethyl-1H-iMidazole 74483-00-4 C10H18N2O2
1-(Phenylsulfonyl)-3-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrrolo[2,3-c]pyridine 1-(Phenylsulfonyl)-3-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrrolo[2,3-c]pyridine 1174038-65-3 C19H21BN2O4S
1,3-diMethyliMidazoliuM dicyanaMide 1,3-diMethyliMidazoliuM dicyanaMide 869301-19-9 C7H9N5
1-tert-Butyl-1H-pyrazole 1-tert-Butyl-1H-pyrazole 15754-60-6 C7H12N2
1-(3-Methoxypropyl)-4-piperidinamine 1-(3-Methoxypropyl)-4-piperidinamine 179474-79-4 C9H20N2O
1-tert-butyl-3-phenyl-1H-pyrazole 1-tert-butyl-3-phenyl-1H-pyrazole 1269293-29-9 C13H16N2
1H-Pyrazolo[4,3-b]pyridine-6-carboxylicacid 1H-Pyrazolo[4,3-b]pyridine-6-carboxylicacid 1256807-59-6 C7H5N3O2
2-broMo-5-Methyl-oxazole 2-broMo-5-Methyl-oxazole 129053-67-4 C4H4BrNO
IMidazo[1,2-a]pyridin-8-aMine, 5-broMo- IMidazo[1,2-a]pyridin-8-aMine, 5-broMo- 1357947-00-2 C7H6BrN3
IMidazo[1,2-a]pyridine-2-carboxylic acid, 7-chloro- IMidazo[1,2-a]pyridine-2-carboxylic acid, 7-chloro- 1020038-42-9 C8H5ClN2O2
4-chloro-2-fluoro-5-iodopyridine 4-chloro-2-fluoro-5-iodopyridine 1184914-20-2 C5H2ClFIN
(S)-N-(Pyrrolidin-3-yl)acetaMide hydrochloride (S)-N-(Pyrrolidin-3-yl)acetaMide hydrochloride 1246277-44-0 C6H13ClN2O
3-fluoro-4-(4-Methyl-1H-iMidazol-1-yl)benzoic acid 3-fluoro-4-(4-Methyl-1H-iMidazol-1-yl)benzoic acid 1243205-04-0 C11H9FN2O2
3-(1-chloroH-pyrrolo[1,2-a]pyrazin-6-yl)cyclobutanone 3-(1-chloroH-pyrrolo[1,2-a]pyrazin-6-yl)cyclobutanone 936901-72-3 C10H8ClN3O
8-BroMo-2,3-dihydro-[1,4]dioxino[2,3-b]pyridine 8-BroMo-2,3-dihydro-[1,4]dioxino[2,3-b]pyridine 643067-83-8 C7H6BrNO2
2-Ethyl-2-oxazoline 2-Ethyl-2-oxazoline 10431-98-8 C5H9NO
1-Methyl-5-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-benzo[d]iMidazol-2(3H)-one 1-Methyl-5-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-benzo[d]iMidazol-2(3H)-one 1187968-73-5 C14H19BN2O3
8-BroMo-3-iodo-iMidazo[1,2-a]pyridine 8-BroMo-3-iodo-iMidazo[1,2-a]pyridine 1232038-69-5 C7H4BrIN2
N-(4-Nitrophenyl)-4-(3-pyridyl)-2-pyriMidineaMine N-(4-Nitrophenyl)-4-(3-pyridyl)-2-pyriMidineaMine 181065-58-7 C15H11N5O2
3-(2-chloropyriMidin-4-yl)-1-Methylindole 3-(2-chloropyriMidin-4-yl)-1-Methylindole 1032452-86-0 C13H10ClN3
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