Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
(4-Pyrazol-1-ylphenyl)methanol (4-Pyrazol-1-ylphenyl)methanol 143426-49-7 C10H10N2O
2-(Hydroxymethyl)pyrrolidine 2-(Hydroxymethyl)pyrrolidine 498-63-5 C5H11NO
1-benzylpyrazol-4-amine 1-benzylpyrazol-4-amine 28466-62-8 C10H11N3
2-Phenyl-1H-benzoimidazol-5-ylamine 2-Phenyl-1H-benzoimidazol-5-ylamine 1767-25-5 C13H11N3
4-(4-CHLORO-6-METHYL-2-PYRIMIDINYL)MORPHOLINE 4-(4-CHLORO-6-METHYL-2-PYRIMIDINYL)MORPHOLINE 118121-82-7 C9H12ClN3O
ethyl4-chlorothieno[3,2-d]pyrimidine-6-carboxylate ethyl4-chlorothieno[3,2-d]pyrimidine-6-carboxylate 596794-87-5 C9H7ClN2O2S
5-AMINO-1-METHYLIMIDAZOLE 5-AMINO-1-METHYLIMIDAZOLE 66787-75-5 C4H7N3
Ethyl 2-(4-(tert-butoxycarbonyl)piperazin-1-yl)-4-hydroxypyrimidine-5-carboxylate Ethyl 2-(4-(tert-butoxycarbonyl)piperazin-1-yl)-4-hydroxypyrimidine-5-carboxylate 1065074-31-8 C16H24N4O5
6-Bromo-2-chloroquinazoline 6-Bromo-2-chloroquinazoline 882672-05-1 C8H4BrClN2
ethyl 6-(trifluoromethyl)imidazo[1,2-a]pyridine-2-carboxylate ethyl 6-(trifluoromethyl)imidazo[1,2-a]pyridine-2-carboxylate 860457-99-4 C11H9F3N2O2
Nornicotine-2-carboxylic Acid Nornicotine-2-carboxylic Acid 3562-11-6 C10H12N2O2
5-Bromoisoxazole 5-Bromoisoxazole 1133930-99-0 C3H2BrNO
6-(Trifluoromethyl)pyridine-2-carbonyl chloride 6-(Trifluoromethyl)pyridine-2-carbonyl chloride 1099597-77-9 C7H3ClF3NO
6-Bromo-3-nitro-pyrazolo[1,5-a]pyrimidine 6-Bromo-3-nitro-pyrazolo[1,5-a]pyrimidine 300361-77-7 C6H3BrN4O2
3-methyl-5-(pyrrolidin-3-yl)-1,2,4-oxadiazolidine 3-methyl-5-(pyrrolidin-3-yl)-1,2,4-oxadiazolidine 82268-15-3 C8H16O3
4-bromo-1-tert-butyl-1H-pyrazole 4-bromo-1-tert-butyl-1H-pyrazole 70951-85-8 C7H11BrN2
6-bromo-2-chloropyrimidin-4-amine 6-bromo-2-chloropyrimidin-4-amine 1333319-66-6 C4H3BrClN3
5-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2-yl)-2-(2,2,2-trifluoroethoxy)pyrimidine 5-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2-yl)-2-(2,2,2-trifluoroethoxy)pyrimidine 1351234-12-2 C12H16BF3N2O3
4-(2-OXO-2-PYRROLIDIN-1-YL-ETHOXY)-BENZALDEHYDE 4-(2-OXO-2-PYRROLIDIN-1-YL-ETHOXY)-BENZALDEHYDE 438229-79-9 C13H15NO3
4-bromomethyloxazole 4-bromomethyloxazole 1065073-37-1 C4H4BrNO
2-bromo-5-pyrrolidin-1-ylpyrazine 2-bromo-5-pyrrolidin-1-ylpyrazine 1001050-21-0 C8H10BrN3
(R)-1-(1H-Benzimidazol-2-yl)-3-methylbutylamine Hydrochloride (R)-1-(1H-Benzimidazol-2-yl)-3-methylbutylamine Hydrochloride 1235643-62-5 C12H18ClN3
4-Thioxo-2-iMidazolidinone 4-Thioxo-2-iMidazolidinone 16310-60-4 C3H4N2OS
1-Boc-3-(aMinoMethyl)-3-hydroxypyrrolidine 1-Boc-3-(aMinoMethyl)-3-hydroxypyrrolidine 114214-73-2 C10H20N2O3
IMidazo[1,2-a]pyridine,6-Methoxy- IMidazo[1,2-a]pyridine,6-Methoxy- 955376-51-9 C8H8N2O
7-Methoxy-4-nitro-1H-pyrazolo[3,4-c]pyridine 7-Methoxy-4-nitro-1H-pyrazolo[3,4-c]pyridine 1416374-56-5 C7H6N4O3
(S)-1-(5-fluoropyriMidin-2-yl)ethanaMine hydrochloride (S)-1-(5-fluoropyriMidin-2-yl)ethanaMine hydrochloride 935667-21-3 C6H9ClFN3
4-BROMOBENZO[D]OXAZOLE 4-BROMOBENZO[D]OXAZOLE 217326-65-3 C7H4BrNO
ethyl 5-aMino-2,6-dichloropyriMidine-4-carboxylate ethyl 5-aMino-2,6-dichloropyriMidine-4-carboxylate 54368-62-6 C7H7Cl2N3O2
(2R)-2-ethynyl-Pyrrolidine (2R)-2-ethynyl-Pyrrolidine 128959-89-7 C6H9N
3-(trifluoroMethyl)-1H-Pyrazole-4-Methanol 3-(trifluoroMethyl)-1H-Pyrazole-4-Methanol 1001020-13-8 C5H5F3N2O
(2R,4R)-1-CBZ-4-aMino Pyrrolidine-2-carboxylic acid Methylester-HCl (2R,4R)-1-CBZ-4-aMino Pyrrolidine-2-carboxylic acid Methylester-HCl 1217457-41-4 C14H19ClN2O4
2-(benzo[d]thiazol-2-yl)-2-(2-chloropyriMidin-4-yl)acetonitrile 2-(benzo[d]thiazol-2-yl)-2-(2-chloropyriMidin-4-yl)acetonitrile 345986-38-1 C13H7ClN4S
6-Quinazolinecarbonitrile, 3,4-dihydro-4-oxo- 6-Quinazolinecarbonitrile, 3,4-dihydro-4-oxo- 117297-41-3 C9H5N3O
2,5-Dioxopyrrolidin-1-yl 6-((((9H-fluoren-9-yl)Methoxy)carbonyl)aMino)hexanoate 2,5-Dioxopyrrolidin-1-yl 6-((((9H-fluoren-9-yl)Methoxy)carbonyl)aMino)hexanoate 125697-63-4 C25H26N2O6
9-Methyl-9H-beta-carboline 9-Methyl-9H-beta-carboline 2521-07-5 C12H10N2
(1S,2S) 2-(1-pyrrolidinyl)-cyclohexanaMine (1S,2S) 2-(1-pyrrolidinyl)-cyclohexanaMine 824938-97-8 C10H20N2
4-broMo-1-(2-Methoxyethyl)-1H-pyrazole 4-broMo-1-(2-Methoxyethyl)-1H-pyrazole 847818-49-9 C6H9BrN2O
2-Methyl-4,5,6,7-tetrahydro-3H-iMidazo[4,5-c]pyridine hydrochloride 2-Methyl-4,5,6,7-tetrahydro-3H-iMidazo[4,5-c]pyridine hydrochloride 1159011-01-4 C7H12ClN3
Uridine, 4'-C-azido-5'-deoxy-5'-iodo-, 2',3'-dibenzoate Uridine, 4'-C-azido-5'-deoxy-5'-iodo-, 2',3'-dibenzoate 139419-02-6 C23H18IN5O7
2,4-dichloro-6-cyclopropyl-5,6,7,8-tetrahydropyrido[4,3-d]pyriMidine 2,4-dichloro-6-cyclopropyl-5,6,7,8-tetrahydropyrido[4,3-d]pyriMidine 1449117-31-0 C10H11Cl2N3
1-(difluoroMethyl)-4-iodo-1H-pyrazole 1-(difluoroMethyl)-4-iodo-1H-pyrazole 1041205-43-9 C4H3F2IN2
1H-Pyrazole, 4,4'-(1,4-phenylene)bis[3,5-diMethyl- 1H-Pyrazole, 4,4'-(1,4-phenylene)bis[3,5-diMethyl- 14181-26-1 C16H18N4
5-BroMo-2-chloro-4-ethoxypyriMidine 5-BroMo-2-chloro-4-ethoxypyriMidine 1289005-72-6 C6H6BrClN2O
2-chloro-3-(MethoxyMethoxy)pyridine 2-chloro-3-(MethoxyMethoxy)pyridine 862667-72-9 C7H8ClNO2
(3S,5R)-5-Methylpyrrolidin-3-ol (3S,5R)-5-Methylpyrrolidin-3-ol 1108234-25-8 C5H11NO
7-(TrifluoroMethyl)iMidazo[1,2-a]pyridine-2-carboxylic acid 7-(TrifluoroMethyl)iMidazo[1,2-a]pyridine-2-carboxylic acid 1620569-19-8 C9H5F3N2O2
6-aMino-3-Methyl-1-(ethyl)-1,2,3,4-tetrahydropyriMidine-2,4-dione 6-aMino-3-Methyl-1-(ethyl)-1,2,3,4-tetrahydropyriMidine-2,4-dione 41862-13-9 C7H11N3O2
3-broMo-5-(trifluoroMethoxy)pyridine 3-broMo-5-(trifluoroMethoxy)pyridine 1060815-01-1 C6H3BrF3NO
1,2-PROPANEDIOL, 3-(2-NITRO-1H-IMIDAZOL-1-YL)- 1,2-PROPANEDIOL, 3-(2-NITRO-1H-IMIDAZOL-1-YL)- 13551-92-3 C6H9N3O4
6-Chloro-2-Methylpyrido[3,4-d]pyriMidin-4(1H)-one 6-Chloro-2-Methylpyrido[3,4-d]pyriMidin-4(1H)-one 1637671-24-9 C8H6ClN3O
(S)-8-chloro-2-(trifluoromethyl)-3,4-dihydro-1H-pyrimido[1,2-a]pyrimidin-6(2H)-one (S)-8-chloro-2-(trifluoromethyl)-3,4-dihydro-1H-pyrimido[1,2-a]pyrimidin-6(2H)-one 1260585-11-2 C8H7ClF3N3O
(2S,4R)-4-Chloro-pyrrolidine-1,2-dicarboxylic acid 1-tert-butyl ester 2-methyl ester (2S,4R)-4-Chloro-pyrrolidine-1,2-dicarboxylic acid 1-tert-butyl ester 2-methyl ester 317356-97-1 C11H18ClNO4
2-AMINO-7-CHLORO-5-OXO-5H-(1)BENZOPYRANO-(2,3-B)-PYRIDINE-3-CARBONITRILE 2-AMINO-7-CHLORO-5-OXO-5H-(1)BENZOPYRANO-(2,3-B)-PYRIDINE-3-CARBONITRILE 1033202-10-6 C7H4ClFN2
2-Phenylbenzoxazole 2-Phenylbenzoxazole 833-50-1 C13H9NO
(3R,4S)-1-(Tert-butoxycarbonyl)-4-phenylpyrrolidine-3-carboxylic acid (3R,4S)-1-(Tert-butoxycarbonyl)-4-phenylpyrrolidine-3-carboxylic acid 956101-09-0 C16H21NO4
6-Bromo-8-chloro-3,3-dimethyl-2,3-dihydroimidazo[1,5-a]pyridine-1,5-dione 6-Bromo-8-chloro-3,3-dimethyl-2,3-dihydroimidazo[1,5-a]pyridine-1,5-dione 1849592-09-1 C9H8BrClN2O2
6-Isopropyl-2-methylimidazo[2,1-b][1,3,4]thiadiazole-5-carboxylic acid 6-Isopropyl-2-methylimidazo[2,1-b][1,3,4]thiadiazole-5-carboxylic acid 1693935-56-6 C9H11N3O2S
Pyrido[2,3-d]pyrimidine-2,4,7(1H,3H,8H)-trione Pyrido[2,3-d]pyrimidine-2,4,7(1H,3H,8H)-trione 258282-54-1 C7H5N3O3
5-chloropyrido[4,3-d]pyrimidine 5-chloropyrido[4,3-d]pyrimidine 1029720-78-2 C7H4ClN3
1H-PYRAZOLE-3-CARBONITRILE, 4-AMINO- 1H-PYRAZOLE-3-CARBONITRILE, 4-AMINO- 68703-67-3 C4H4N4
4-chloro-2,7-dimethylthieno[3,2-d]pyrimidine 4-chloro-2,7-dimethylthieno[3,2-d]pyrimidine 936837-34-2 C8H7ClN2S
2-tert-butyl-5H,6H,7H,8H-imidazo[1,2-a]pyridin-6-amine 2-tert-butyl-5H,6H,7H,8H-imidazo[1,2-a]pyridin-6-amine 1306606-89-2 C11H19N3
1,3-bis((1H-imidazol-1-yl)methyl)benzene 1,3-bis((1H-imidazol-1-yl)methyl)benzene 69506-92-9 C14H14N4
4-Chloro-2H-pyrazolo[4,3-c]pyridine 4-Chloro-2H-pyrazolo[4,3-c]pyridine 1821250-10-5 C6H4ClN3
2-Bromo-1,3-benzothiazole 2-Bromo-1,3-benzothiazole 2516-40-7 C7H4BrNS
(S)-(+)-1-(2-Pyrrolidinylmethyl)pyrrolidine (S)-(+)-1-(2-Pyrrolidinylmethyl)pyrrolidine 84466-85-3 C11H22N2
1-ALLYL-3 5-DIMETHYLPYRAZOLE  96 1-ALLYL-3 5-DIMETHYLPYRAZOLE 96 13369-74-9 C8H12N2
N-(2-HYDROXYBENZOYL)PYRROLIDINE  97 N-(2-HYDROXYBENZOYL)PYRROLIDINE 97 98841-68-0 C11H13NO2
1-Nitroso-1H-imidazole 1-Nitroso-1H-imidazole 1233340-45-8 C3H3N3O
7-Bromothieno[3,2-c]pyridine 7-Bromothieno[3,2-c]pyridine 1535297-40-5 C7H4BrNS
MBM morpholine derivatives MBM morpholine derivatives
1H-Pyrazol-5-ol, 1,4-dimethyl-3-(trifluoromethyl)- 1H-Pyrazol-5-ol, 1,4-dimethyl-3-(trifluoromethyl)- 656825-59-1 C6H7F3N2O
1,3-bis(4-carboxyphenyl)imidazoliumchloride 1,3-bis(4-carboxyphenyl)imidazoliumchloride 1414629-40-5 C17H13ClN2O4
4-OXO-3,4-DIHYDROTHIENO[3,2-D]PYRIMIDINE-7-CARBOXYLIC ACID 4-OXO-3,4-DIHYDROTHIENO[3,2-D]PYRIMIDINE-7-CARBOXYLIC ACID 1527518-33-7 C7H4N2O3S
2-amino-5-nitro-4,6-dimethylpyridine 2-amino-5-nitro-4,6-dimethylpyridine 22934-22-1 C7H9N3O2
7-chloro-5-methyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-amine 7-chloro-5-methyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-amine 99951-68-5 C6H6ClN5
1-phenyl-1H-imidazo[4,5-c]pyridine 1-phenyl-1H-imidazo[4,5-c]pyridine 61532-35-2 C12H9N3
N-Hydroxy-N'-[5-(2-methyl-2-propanyl)-1H-pyrazol-3-yl]-4-nitroben zenecarboximidamide N-Hydroxy-N'-[5-(2-methyl-2-propanyl)-1H-pyrazol-3-yl]-4-nitroben zenecarboximidamide 152828-23-4 C14H17N5O3
7-Iodo-2',3'-Dideoxy-7-Deaza-Guanosine 7-Iodo-2',3'-Dideoxy-7-Deaza-Guanosine 114748-67-3 C11H13IN4O3
2-Chloro-4-(1H-Pyrazol-5-Yl)Benzonitrile 2-Chloro-4-(1H-Pyrazol-5-Yl)Benzonitrile 1297537-37-1 C10H6ClN3
DE-7 DE-7 681490-93-7 C7H8ClN3O3
(2S,3S,4R)-1-tert-butyl 2-methyl 4-((3-(1,1-difluorobut-3-en-1-yl)-7-methoxyquinoxalin-2 -yl)oxy)-3-ethylpyrrolidine-1,2-dicarboxylat (2S,3S,4R)-1-tert-butyl 2-methyl 4-((3-(1,1-difluorobut-3-en-1-yl)-7-methoxyquinoxalin-2 -yl)oxy)-3-ethylpyrrolidine-1,2-dicarboxylat C26H33F2N3O6
1H-Imidazol-2-amine,1-[(6-chloro-3-pyridinyl)methyl]-4,5-dihydro-N-nitroso- 1H-Imidazol-2-amine,1-[(6-chloro-3-pyridinyl)methyl]-4,5-dihydro-N-nitroso- 131206-85-4 C9H10ClN5O
2,4(1H,3H)-Pyrimidinedione,1-propyl- 2,4(1H,3H)-Pyrimidinedione,1-propyl- 24466-52-2 C7H10N2O2
5H-Cyclopenta[c]pyridine-5,7(6H)-dione 5H-Cyclopenta[c]pyridine-5,7(6H)-dione 5807-19-2 C8H5NO2
3-(4-TOLYL)PYRAZOLE 3-(4-TOLYL)PYRAZOLE 59843-75-3 C10H10N2
5,6-Dibromo-1H-benzotriazole 5,6-Dibromo-1H-benzotriazole 716320-92-2 C6H3Br2N3
6-(Bromomethyl)imidazo[2,1-b]-[1,3]thiazole hydrobromide 6-(Bromomethyl)imidazo[2,1-b]-[1,3]thiazole hydrobromide 330196-49-1 C6H6Br2N2S
tert-butyl cis-3-fluoro-4-hydroxypyrrolidine-1-carboxylate tert-butyl cis-3-fluoro-4-hydroxypyrrolidine-1-carboxylate 2055223-76-0 C9H16FNO3
1-Butyl-1-methylpyrrolidinium Bis(fluorosulfonyl)imide 1-Butyl-1-methylpyrrolidinium Bis(fluorosulfonyl)imide 1057745-51-3 C9H20F2N2O4S2
21H,23H-Porphine,5,10,15,20-tetra-1H-pyrazol-4-yl- 21H,23H-Porphine,5,10,15,20-tetra-1H-pyrazol-4-yl- 1849676-26-1 C32H22N12
3-(4-METHOXYPHENYL)PYRROLIDINE OXALATE 3-(4-METHOXYPHENYL)PYRROLIDINE OXALATE 96877-34-8 C13H17NO5
5-Chloro-1-methyl-1H-pyrazolo[4,3-d]pyrimidine 5-Chloro-1-methyl-1H-pyrazolo[4,3-d]pyrimidine 1393181-01-5 C6H5ClN4
6-methoxy-5-nitropyrimidin-4-amine 6-methoxy-5-nitropyrimidin-4-amine 73318-75-9 C5H6N4O3
4-Chlorooxazolo[4,5-c]pyridine 4-Chlorooxazolo[4,5-c]pyridine 1159829-15-8 C6H3ClN2O
4-(TERT-BUTYL)-1H-IMIDAZOL-2-AMINE HCL 4-(TERT-BUTYL)-1H-IMIDAZOL-2-AMINE HCL 1384100-95-1 C7H14ClN3
4-CHLORO-6-METHYLQUINAZOLINE 4-CHLORO-6-METHYLQUINAZOLINE 58421-79-7 C9H7ClN2
1-(2,2,2-trifluoroethyl)pyrazole-3-carbaldehyde 1-(2,2,2-trifluoroethyl)pyrazole-3-carbaldehyde 1310379-34-0 C6H5F3N2O
Substituted pyrazine Substituted pyrazine 2095311-51-4 C22H23N5O2
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