Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
Proline, 1-(2-cyanoethyl)- (9CI) Proline, 1-(2-cyanoethyl)- (9CI) 36901-89-0 C8H12N2O2
Carbamic acid, [(3R,4S)-4-fluoro-3-pyrrolidinyl]-, 1,1-dimethylethyl ester, rel- Carbamic acid, [(3R,4S)-4-fluoro-3-pyrrolidinyl]-, 1,1-dimethylethyl ester, rel- 169750-42-9 C9H17FN2O2
1-Octanoylbenzotriazole 1-Octanoylbenzotriazole 58068-80-7 C14H19N3O
2-CHLORO-3-IODO-5-PICOLINE 2-CHLORO-3-IODO-5-PICOLINE 59782-91-1 C6H5ClIN
2,4,6(1H,3H,5H)-Pyrimidinetrione, 5-methyl- (9CI) 2,4,6(1H,3H,5H)-Pyrimidinetrione, 5-methyl- (9CI) 2417-22-3 C5H6N2O3
4-Pyrimidinecarbonitrile, 2-(dimethylamino)- (9CI) 4-Pyrimidinecarbonitrile, 2-(dimethylamino)- (9CI) 79605-00-8 C7H8N4
1H-BENZIMIDAZOL-7-AMINE 1H-BENZIMIDAZOL-7-AMINE 4331-29-7 C7H7N3
1-(tert-butyl) 2-methyl (2S,4R)-4-((4,4''-diamino-5'-(4-aminophenyl)-[1,1':3',1''-terphenyl]-4'-yl)oxy)pyrrolidine-1,2-dicarboxylate 1-(tert-butyl) 2-methyl (2S,4R)-4-((4,4''-diamino-5'-(4-aminophenyl)-[1,1':3',1''-terphenyl]-4'-yl)oxy)pyrrolidine-1,2-dicarboxylate 2116475-69-3 C35H38N4O5
2-chloro-3-methoxy-4-(1-((2-(trimethylsilyl)ethoxy)methyl)-1H-1,2,4-triazol-3-yl)pyridine 2-chloro-3-methoxy-4-(1-((2-(trimethylsilyl)ethoxy)methyl)-1H-1,2,4-triazol-3-yl)pyridine
Fenoxazoline Fenoxazoline
Midodrine hydrochloride Midodrine hydrochloride 3092-17-9 C12H19ClN2O4
P-(2-BENZOXAZOLYL)BENZYL CHLORIDE P-(2-BENZOXAZOLYL)BENZYL CHLORIDE 57864-19-4 C14H10ClNO
5-Chloro-2-methoxy-4-methylpyridine 5-Chloro-2-methoxy-4-methylpyridine 851607-29-9 C7H8ClNO
3-IODO-4-METHOXY-PYRIDINE 3-IODO-4-METHOXY-PYRIDINE 89640-55-1 C6H6INO
1H-Benzimidazole,5-chloro-2-propyl-(9CI) 1H-Benzimidazole,5-chloro-2-propyl-(9CI) 4887-91-6 C10H11ClN2
7H-Pyrrolo[1,2-c]imidazol-7-one,5,6-dihydro-(9CI) 7H-Pyrrolo[1,2-c]imidazol-7-one,5,6-dihydro-(9CI) 426219-43-4 C6H6N2O
1H-Benzimidazol-2-amine,5-chloro-6-fluoro-(9CI) 1H-Benzimidazol-2-amine,5-chloro-6-fluoro-(9CI) 142356-64-7 C7H5ClFN3
1H-Imidazole-5-carboxylicacid,1-(1-methylethyl)-(9CI) 1H-Imidazole-5-carboxylicacid,1-(1-methylethyl)-(9CI) 105293-81-0 C7H10N2O2
3-(4-Pyridine)acrylic acid 3-(4-Pyridine)acrylic acid 84228-93-3 C8H7NO2
1-tert-Butyl-4-iodo-1H-pyrazole 1-tert-Butyl-4-iodo-1H-pyrazole 1354705-41-1 C7H11IN2
1-(azetidin-3-yl)-4-iodo-1H-pyrazole 1-(azetidin-3-yl)-4-iodo-1H-pyrazole 1343072-59-2 C6H8IN3
6-CHLORO-2-PHENYLIMIDAZO[1,2-A]PYRIDINE-3-CARBOXYLIC ACID 6-CHLORO-2-PHENYLIMIDAZO[1,2-A]PYRIDINE-3-CARBOXYLIC ACID 220465-51-0 C14H9ClN2O2
1,3-DIMETHYL-4-NITRO-1H-PYRAZOLE 1,3-DIMETHYL-4-NITRO-1H-PYRAZOLE 3920-38-5 C5H7N3O2
6-AZACYTOSINE 6-AZACYTOSINE 931-85-1 C3H4N4O
2-OXO-PYRROLIDINE-3-CARBOXYLIC ACID ETHYL ESTER 2-OXO-PYRROLIDINE-3-CARBOXYLIC ACID ETHYL ESTER 36821-26-8 C7H11NO3
3,5-DIMETHYL-4-NITROISOXAZOLE 3,5-DIMETHYL-4-NITROISOXAZOLE 1123-49-5 C5H6N2O3
Benzyl (2R,4S)-4-amino-2-methylpyrrolidine-1-carboxylate Benzyl (2R,4S)-4-amino-2-methylpyrrolidine-1-carboxylate 2165506-16-9 C13H18N2O2
6'-Bromo-8'-chloro-1',5'-dioxo-1',5'-dihydro-2'H-spiro[cyclohexane-1,3'-imidazo[1,5-a]pyridine]-4-carbonitrile 6'-Bromo-8'-chloro-1',5'-dioxo-1',5'-dihydro-2'H-spiro[cyclohexane-1,3'-imidazo[1,5-a]pyridine]-4-carbonitrile 1849593-46-9 C13H11BrClN3O2
5-[1-(hydroxyimino)ethyl]-4-methylpyrimidin-2-amine 5-[1-(hydroxyimino)ethyl]-4-methylpyrimidin-2-amine 1050886-14-0 C7H10N4O
2-BROMO-4-METHYL-1H-IMIDAZOLE 2-BROMO-4-METHYL-1H-IMIDAZOLE 23328-88-3 C4H5BrN2
1-(3,4,5-Trihydroxypentanoyl)-β-carboline 1-(3,4,5-Trihydroxypentanoyl)-β-carboline 180995-40-8 C16H16N2O4
(6-Methyl-1H-benzimidazol-2-yl)methanol (6-Methyl-1H-benzimidazol-2-yl)methanol 20034-02-0 C9H10N2O
4-(2-bromoethyl)pyridine hydrobromide 4-(2-bromoethyl)pyridine hydrobromide 120277-01-2 C7H9Br2N
1-{[(tert-butoxy)carbonyl]amino}-5-oxopyrrolidine-3-carboxylic acid 1-{[(tert-butoxy)carbonyl]amino}-5-oxopyrrolidine-3-carboxylic acid 1354952-07-0 C10H16N2O5
(E)-3-(2-(thiophen-2-yl)vinyl)-1H-pyrazole (E)-3-(2-(thiophen-2-yl)vinyl)-1H-pyrazole 1070881-42-3 C9H8N2S
1,3-DIMETHYL-1H-PYRAZOLE-5-CARBONITRILE 1,3-DIMETHYL-1H-PYRAZOLE-5-CARBONITRILE 306936-77-6 C6H7N3
2-{5H,6H,7H,8H,9H-[1,2,4]triazolo[4,3-a]azepin-3-yl}pyrrolidine 2-{5H,6H,7H,8H,9H-[1,2,4]triazolo[4,3-a]azepin-3-yl}pyrrolidine 923690-18-0 C11H18N4
4-chloro-6-(2,2,2-trifluoroethyl)thieno[3,2-d]pyrimidine 4-chloro-6-(2,2,2-trifluoroethyl)thieno[3,2-d]pyrimidine 2102553-51-3 C8H4ClF3N2S
Fluclotizolam Fluclotizolam 54123-15-8 C15H10ClFN4S
4-Pyrimidinamine, 5,6-dichloro-N-methyl- 4-Pyrimidinamine, 5,6-dichloro-N-methyl- 1428252-93-0 C5H5Cl2N3
(2,5-dioxopyrrolidin-1-yl) (2R)-2-[(2-methylpropan-2-yl)oxycarbonylamino]-5-(phenylmethoxycarbonylamino)pentanoate (2,5-dioxopyrrolidin-1-yl) (2R)-2-[(2-methylpropan-2-yl)oxycarbonylamino]-5-(phenylmethoxycarbonylamino)pentanoate 57225-26-0 C22H29N3O8
Ethyl 1-Methyl-2,4-dioxo-1H,2H,3H,4H-pyrido[2,3-d]pyrimidine-7-carboxylate Ethyl 1-Methyl-2,4-dioxo-1H,2H,3H,4H-pyrido[2,3-d]pyrimidine-7-carboxylate 1000932-39-7 C11H11N3O4
5-(Benzyloxy)-1,2-dimethyl-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid 5-(Benzyloxy)-1,2-dimethyl-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid 389130-68-1 C14H14N2O4
4-(propan-2-yl)pyrimidin-5-amine dihydrochloride 4-(propan-2-yl)pyrimidin-5-amine dihydrochloride 2241139-74-0 C7H12ClN3
1,3-Dioxolane 1,3-Dioxolane 646-06-0 C3H6O2
5-ISOXAZOLEMETHANOL 5-ISOXAZOLEMETHANOL 98019-60-4 C4H5NO2
Boron trifluoride tetrahydrofuran complex Boron trifluoride tetrahydrofuran complex 462-34-0 C4H8BF3O
Oxazole-4-carbonitrile Oxazole-4-carbonitrile 55242-84-7 C4H2N2O
PYRROLO[1,2-F][1,2,4]TRIAZIN-4-AMINE PYRROLO[1,2-F][1,2,4]TRIAZIN-4-AMINE 159326-68-8 C6H6N4
OXOTREMORINE SESQUIFUMARATE OXOTREMORINE SESQUIFUMARATE 17360-35-9 C36H48N4O14
2,4,4-TRIMETHYL-2-OXAZOLINE 2,4,4-TRIMETHYL-2-OXAZOLINE 1772-43-6 C6H11NO
4-Thiazolecarboxylic acid 4-Thiazolecarboxylic acid 3973-08-8 C4H3NO2S
2-ISOPROPYL-4(5)-NITROIMIDAZOLE 2-ISOPROPYL-4(5)-NITROIMIDAZOLE 13373-32-5 C6H9N3O2
4-CHLORO-2-PHENYLQUINAZOLINE 4-CHLORO-2-PHENYLQUINAZOLINE 6484-25-9 C14H9ClN2
1H-Imidazol-4-ylmethylamine dihydrochloride 1H-Imidazol-4-ylmethylamine dihydrochloride 72631-80-2 C4H9Cl2N3
1-tert-Butyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole 1-tert-Butyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole 1256359-15-5 C13H23BN2O2
N-(Furan-2-ylmethyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrimidin-2-amine N-(Furan-2-ylmethyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrimidin-2-amine 1218790-00-1 C15H20BN3O3
3-bromo-6-methoxyimidazo[1,2-a]pyridine 3-bromo-6-methoxyimidazo[1,2-a]pyridine 1044733-59-6 C8H7BrN2O
6-methyl-1H-benzimidazol-7-amine(SALTDATA: FREE) 6-methyl-1H-benzimidazol-7-amine(SALTDATA: FREE) 935873-39-5 C8H9N3
5-(3-fluorophenyl)pyridine-3-carbonitrile 5-(3-fluorophenyl)pyridine-3-carbonitrile 1214373-90-6 C12H7FN2
5-(forMylaMino)-1H-pyrazole-4-carboxaMide 5-(forMylaMino)-1H-pyrazole-4-carboxaMide 22407-20-1 C5H6N4O2
2-AMino-1,4,5,6-tetrahydropyriMidine Hydrochloride 2-AMino-1,4,5,6-tetrahydropyriMidine Hydrochloride 26893-39-0 C4H10ClN3
1H-IMidazole, 4,5-dihydro-2-(4-Methylphenyl)- 1H-IMidazole, 4,5-dihydro-2-(4-Methylphenyl)- 13623-58-0 C10H12N2
(R)-3-cyclopentyl-3-(4-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazol-1-yl)propanenitrile (R)-3-cyclopentyl-3-(4-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazol-1-yl)propanenitrile 1146629-84-6 C17H26BN3O2
2,3-Bis(benzyloxy)pyridine 2,3-Bis(benzyloxy)pyridine 1228665-98-2 C19H17NO2
6-Chloro-5-nitroimidazo[2,1-b][1,3]thiazole 6-Chloro-5-nitroimidazo[2,1-b][1,3]thiazole 23576-89-8 C5H2ClN3O2S
4-CHLORO-3H-IMIDAZO[4,5-C]PYRIDINE 4-CHLORO-3H-IMIDAZO[4,5-C]PYRIDINE 81053-66-9 C6H4ClN3
1-tert-butyl-5-chloro-1H-pyrazole-4-carbonitrile 1-tert-butyl-5-chloro-1H-pyrazole-4-carbonitrile 1050619-87-8 C8H10ClN3
1-(DiMethylsulfaMoyl)pyrazole 1-(DiMethylsulfaMoyl)pyrazole 133228-21-4 C5H9N3O2S
S-2-(CBZ-AMINOMETHYL)PYRROLIDINE-HCl S-2-(CBZ-AMINOMETHYL)PYRROLIDINE-HCl 1033245-45-2 C13H19ClN2O2
6-BroMo-2-chloro-8-fluoroquinazoline 6-BroMo-2-chloro-8-fluoroquinazoline 953039-25-3 C8H3BrClFN2
(3R,5R)-5-Methylpyrrolidin-3-ol hydrochloride (3R,5R)-5-Methylpyrrolidin-3-ol hydrochloride 857651-11-7 C5H12ClNO
2-aMino-3-(2-Methoxybenzoyl)-5-broMopyridine 2-aMino-3-(2-Methoxybenzoyl)-5-broMopyridine 875639-76-2 C13H11BrN2O2
(3R)-1-Methyl-3-PyrrolidinaMine hydrochloride (3R)-1-Methyl-3-PyrrolidinaMine hydrochloride 403712-80-1 C5H13ClN2
IMidazo[1,2-a]pyridine, 6-fluoro-2-phenyl- IMidazo[1,2-a]pyridine, 6-fluoro-2-phenyl- 1126635-20-8 C13H9FN2
(2R,4S)-1-FMoc-4-BOC-aMino Pyrrolidine-2-carboxylic acid (2R,4S)-1-FMoc-4-BOC-aMino Pyrrolidine-2-carboxylic acid 1820570-42-0 C25H28N2O6
1-Ethyl-1-methylpyrrolidinium bis(trifluoromethylsulfonyl)imide 1-Ethyl-1-methylpyrrolidinium bis(trifluoromethylsulfonyl)imide 223436-99-5 C9H16F6N2O4S2
2-(3,4-diMethoxybenzyl)-7-((2S,3S)-2-hydroxy-6-phenylhexan-3-yl)-5-MethyliMidazo[1,5-f][1,2,4]triazin-4(3H)-one 2-(3,4-diMethoxybenzyl)-7-((2S,3S)-2-hydroxy-6-phenylhexan-3-yl)-5-MethyliMidazo[1,5-f][1,2,4]triazin-4(3H)-one 439083-91-7 C27H32N4O4
2-broMo-5-iodoiMidazo[2,1-b]thiazole 2-broMo-5-iodoiMidazo[2,1-b]thiazole 1379307-48-8 C5H2BrIN2S
3-BroMo-8-Methyl-iMidazo[1,2-a]pyridine-2-carboxylic acid 3-BroMo-8-Methyl-iMidazo[1,2-a]pyridine-2-carboxylic acid 1313712-29-6 C9H7BrN2O2
IMidazo[1,2-a]pyriMidine hydrochloride IMidazo[1,2-a]pyriMidine hydrochloride 6840-21-7 C6H6ClN3
1-propenyl-3-MethyliMidazoliuM perchlorate 1-propenyl-3-MethyliMidazoliuM perchlorate 1366043-39-1 C7H11ClN2O4
1H-lMidazoliuM,2-[[(4S,5S)-1,3-diMiethyl-4,5-diphenyl-2-iMidazolinydene]aMino]-4,5-dihydro-1,3-diMethyl-4,5-diphenyl-,choride(1:1),(4S,5S)- 1H-lMidazoliuM,2-[[(4S,5S)-1,3-diMiethyl-4,5-diphenyl-2-iMidazolinydene]aMino]-4,5-dihydro-1,3-diMethyl-4,5-diphenyl-,choride(1:1),(4S,5S)- 1268449-00-8 C34H36ClN5
2-(4-Bromophenyl)-4-phenylquinazoline 2-(4-Bromophenyl)-4-phenylquinazoline 540466-42-0 C20H13BrN2
(R)-N-(2-oxo-2-(pyrrolidin-3-ylaMino)-ethyl)-3-(trifluoroMethyl)benzaMide (R)-N-(2-oxo-2-(pyrrolidin-3-ylaMino)-ethyl)-3-(trifluoroMethyl)benzaMide 226249-16-7 C14H16F3N3O2
1-(1-Ethoxyethyl)-4-iodo-1H-pyrazole 1-(1-Ethoxyethyl)-4-iodo-1H-pyrazole 575452-22-1 C7H11IN2O
3-(4-BroMophenyl)pyrrolidine hydrochloride 3-(4-BroMophenyl)pyrrolidine hydrochloride 1187931-39-0 C10H13BrClN
MethaniMidaMide, N'-[1-cyclopropyl-3-(2-fluoro-4-iodophenyl)-1,2,3,6-tetrahydro-2,6-dioxo-4-pyriMidinyl]-N,N-diMethyl- MethaniMidaMide, N'-[1-cyclopropyl-3-(2-fluoro-4-iodophenyl)-1,2,3,6-tetrahydro-2,6-dioxo-4-pyriMidinyl]-N,N-diMethyl- 871700-30-0 C16H16FIN4O2
Furo[2,3-d]pyriMidine, 4-chloro-5,6-diphenyl- Furo[2,3-d]pyriMidine, 4-chloro-5,6-diphenyl- 65148-07-4 C18H11ClN2O
1,4-Di(1H-pyrazol-4-yl)benzene 1,4-Di(1H-pyrazol-4-yl)benzene 1036248-62-0 C12H10N4
9-Boc-3-oxa-7,9-diazabicyclo[3.3.1]nonane 9-Boc-3-oxa-7,9-diazabicyclo[3.3.1]nonane 1251010-45-3 C11H20N2O3
5-(3-Hydroxypropyl)-2,4(1H,3H)-pyriMidinedione 5-(3-Hydroxypropyl)-2,4(1H,3H)-pyriMidinedione 53761-38-9 C7H10N2O3
3-(piperidin-4-yl)pyridine hydrochloride 3-(piperidin-4-yl)pyridine hydrochloride 690261-73-5 C10H15ClN2
4-BroMo-1H-iMidazole-2-carboxylic acid 4-BroMo-1H-iMidazole-2-carboxylic acid 1260753-02-3 C4H3BrN2O2
(2R,4S)-1-((S)-2-amino-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-1-(4-(4-methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide hydrochloride (2R,4S)-1-((S)-2-amino-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-1-(4-(4-methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide hydrochloride
2H-IMIDAZO[4,5-B]PYRAZIN-2-ONE, 1,3-DIHYDRO- 2H-IMIDAZO[4,5-B]PYRAZIN-2-ONE, 1,3-DIHYDRO- 16328-63-5 C5H4N4O
6-METHYL-2-(PIPERIDIN-4-YL)-1H-BENZO[D]IMIDAZOLE 6-METHYL-2-(PIPERIDIN-4-YL)-1H-BENZO[D]IMIDAZOLE 295790-48-6 C13H17N3
1,6-Diazabicyclo[3.2.1]octane-2-carboxylic acid, 7-oxo-6-(sulfooxy)-, 2-[2-[(3S)-3-pyrrolidinylcarbonyl]hydrazide], (1R,2S,5R)- 1,6-Diazabicyclo[3.2.1]octane-2-carboxylic acid, 7-oxo-6-(sulfooxy)-, 2-[2-[(3S)-3-pyrrolidinylcarbonyl]hydrazide], (1R,2S,5R)- 1452460-79-5 C12H19N5O7S
1-METHYL-1H-BENZOIMIDAZOL-5-YLAMINE TRIHYDROCHLORIDE 1-METHYL-1H-BENZOIMIDAZOL-5-YLAMINE TRIHYDROCHLORIDE 10394-38-4 C8H9N3
2,4(1H,3H)-Pyrimidinedione, 1-cyclopentyl- 2,4(1H,3H)-Pyrimidinedione, 1-cyclopentyl- 13345-72-7 C9H12N2O2
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