Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
(TRANS)-4-(4-CHLORO-PHENYL)-PYRROLIDINE-3-CARBOXYLIC ACID-HCL (TRANS)-4-(4-CHLORO-PHENYL)-PYRROLIDINE-3-CARBOXYLIC ACID-HCL 1807940-40-4 C11H13Cl2NO2
N,N'-BIS-BOC-1-GUANYLPYRAZOLE N,N'-BIS-BOC-1-GUANYLPYRAZOLE 152120-54-2 C14H22N4O4
2-(4-BROMOBENZYL)-1H-BENZIMIDAZOLE 2-(4-BROMOBENZYL)-1H-BENZIMIDAZOLE 100622-41-1 C14H11BrN2
4-Amino-2-chloro-6-methyl-5-nitropyrimidine ,98% 4-Amino-2-chloro-6-methyl-5-nitropyrimidine ,98% C5H5ClN4O2
2-Methylindole-3-ethylamine 2-Methylindole-3-ethylamine 2731-06-8 C11H14N2
(Diacetoxyiodo)benzene (Diacetoxyiodo)benzene 3240-34-4 C10H11IO4
(S)-2-(2-CHLOROPHENYL)PYRROLIDINE (S)-2-(2-CHLOROPHENYL)PYRROLIDINE 1217788-99-2 C10H12ClN
5-OXO-5-PYRROLIDIN-1-YL-PENTANOIC ACID 5-OXO-5-PYRROLIDIN-1-YL-PENTANOIC ACID 5724-80-1 C9H15NO3
Fluorodi(4-morpholinyl)phosphine oxide Fluorodi(4-morpholinyl)phosphine oxide 565-25-3 C8H16FN2O3P
5-AMINO-1,3-DIMETHYL-1,3-DIHYDRO-BENZOIMIDAZOL-2-ONE 5-AMINO-1,3-DIMETHYL-1,3-DIHYDRO-BENZOIMIDAZOL-2-ONE 53439-88-6 C9H11N3O
N-(4-PHENOXYPHENYL)PICOLINAMIDE N-(4-PHENOXYPHENYL)PICOLINAMIDE 255904-96-2 C18H14N2O2
4-METHOXY-1H-PYRAZOLO[3,4-D]PYRIMIDIN-6-AMINE 4-METHOXY-1H-PYRAZOLO[3,4-D]PYRIMIDIN-6-AMINE 100644-67-5 C6H7N5O
(S)-pyrrolidine-3-carboxylic acid hydrochloride (S)-pyrrolidine-3-carboxylic acid hydrochloride 1124369-40-9 C5H10ClNO2
4-Chloro-6-iodo-7-phenylsulfonyl-7H-pyrrolo[2,3-d]pyrimidine 4-Chloro-6-iodo-7-phenylsulfonyl-7H-pyrrolo[2,3-d]pyrimidine 876343-09-8 C12H7ClIN3O2S
2-ISOPROPYL PYRIDINE 2-ISOPROPYL PYRIDINE 644-98-4 C8H11N
7-Bromo-2-methylbenzo[d]oxazole 7-Bromo-2-methylbenzo[d]oxazole 1239489-82-7 C8H6BrNO
2-Trifluoromethylimidazole-4-carboxylic acid 2-Trifluoromethylimidazole-4-carboxylic acid 78016-98-5 C5H3F3N2O2
3,6-Bis(3,5-dimethyl-1H-pyrazol-1-yl)-1,2,4,5-tetrazine 3,6-Bis(3,5-dimethyl-1H-pyrazol-1-yl)-1,2,4,5-tetrazine 30169-25-6 C12H14N8
5-Chlorooxindole 5-Chlorooxindole 17630-75-0 C8H6ClNO
1-(3-BROMOBENZYL)PYRROLIDINE 1-(3-BROMOBENZYL)PYRROLIDINE 168820-15-3 C11H14BrN
URIDINE-2',3'-CYCLIC MONOPHOSPHATE SODIUM SALT URIDINE-2',3'-CYCLIC MONOPHOSPHATE SODIUM SALT 15718-50-0 C9H10N2NaO8P
2-Methylindole 2-Methylindole 95-20-5 C9H9N
tert-butyl (S)-4-(7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate tert-butyl (S)-4-(7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate 2252403-84-0 C26H32ClFN6O3
2-Oxo-1-(4-piperidinyl)-2,3-dihydro-1H-imidazo[4,5-b]pyridine dihydrochloride 2-Oxo-1-(4-piperidinyl)-2,3-dihydro-1H-imidazo[4,5-b]pyridine dihydrochloride 781649-84-1 C11H15ClN4O
6-Nitroimidazo[1,2-a]pyridine-2-carboxylic acid 6-Nitroimidazo[1,2-a]pyridine-2-carboxylic acid 904805-51-2 C8H5N3O4
5-hydroxy-pyrazole 5-hydroxy-pyrazole 60456-92-0 C3H4N2O
2,4-Dichloro-6-methylthieno[2,3-d]pyrimidine 2,4-Dichloro-6-methylthieno[2,3-d]pyrimidine 76872-23-6 C7H4Cl2N2S
4-broMo-2-(2-Methoxyethoxy)pyridine 4-broMo-2-(2-Methoxyethoxy)pyridine 1289131-55-0 C8H10BrNO2
1-tert-Butyl 2-methyl 2-methylpyrrolidine-1,2-dicarboxylate 1-tert-Butyl 2-methyl 2-methylpyrrolidine-1,2-dicarboxylate 317355-80-9 C12H21NO4
1H-Pyrazole-1-propanenitrile, β-cyclopentyl-4-[7-[[2-(triMethylsilyl)ethoxy]Methyl]-7H-pyrrolo[2,3-d]pyriMidin-4-yl]-, (βR)- 1H-Pyrazole-1-propanenitrile, β-cyclopentyl-4-[7-[[2-(triMethylsilyl)ethoxy]Methyl]-7H-pyrrolo[2,3-d]pyriMidin-4-yl]-, (βR)- 941685-40-1 C23H32N6OSi
2,4-DICHLORO-5-FLUORO-7H-PYRROLO[2,3-D]PYRIMIDINE 2,4-DICHLORO-5-FLUORO-7H-PYRROLO[2,3-D]PYRIMIDINE 1053228-29-7 C6H2Cl2FN3
3-BroMo-pyrrolidine hydrochloride 3-BroMo-pyrrolidine hydrochloride 952748-39-9 C4H9BrClN
5-bromo-4-fluoro-1H-indazole 5-bromo-4-fluoro-1H-indazole 1082041-85-7 C7H4BrFN2
Ethyl 7H-pyrrolo[2,3-d]pyriMidine-4-carboxylate Ethyl 7H-pyrrolo[2,3-d]pyriMidine-4-carboxylate 915142-91-5 C9H9N3O2
5-benzyl-4,5,6,7-tetrahydroisoxazolo[4,3-c]pyridine 5-benzyl-4,5,6,7-tetrahydroisoxazolo[4,3-c]pyridine 35005-72-2 C13H14N2O
3-diMethylpyrrolidine-3-carboxylic acid 3-diMethylpyrrolidine-3-carboxylic acid 912771-28-9 C7H13NO2
BOC-4-HYDROXY-L-PYRROLIDINE LACTONE BOC-4-HYDROXY-L-PYRROLIDINE LACTONE 113775-22-7 C10H15NO4
4-(1-BUTENYL PENTENYL) PYRIDINE 4-(1-BUTENYL PENTENYL) PYRIDINE 2057-34-3 C14H19N
5',3'']Terpyridine 5',3'']Terpyridine 106047-31-8 C15H11N3
2,3,4-trimethyl-5,6-diphenylpyridine 2,3,4-trimethyl-5,6-diphenylpyridine 1004547-55-0 C20H19N
(R)-4-BENZYL-1,3-OXAZOLIDINE-2-THIONE (R)-4-BENZYL-1,3-OXAZOLIDINE-2-THIONE 190970-58-2 C10H11NOS
2-Methyl-4-phenyl-1H-imidazole 2-Methyl-4-phenyl-1H-imidazole 13739-48-5 C10H10N2
1H-1,2,4-Triazole-3,5-diamine 1H-1,2,4-Triazole-3,5-diamine 1455-77-2 C2H5N5
1-(4-Nitrophenyl)-1H-pyrazole 1-(4-Nitrophenyl)-1H-pyrazole 3463-30-7 C9H7N3O2
5-(CHLOROMETHYL)-1,3-DIMETHYL-1H-PYRAZOLE 5-(CHLOROMETHYL)-1,3-DIMETHYL-1H-PYRAZOLE 852227-86-2 C6H9ClN2
(1,3-DIMETHYL-1H-PYRAZOL-5-YL)METHANOL (1,3-DIMETHYL-1H-PYRAZOL-5-YL)METHANOL 57012-20-1 C6H10N2O
5-methyl-1H-4-carboxylic acid 5-methyl-1H-4-carboxylic acid 1457-59-6 C5H6N2O2
3-(1-pyrrolidinyl)propiophenone hydrochloride 3-(1-pyrrolidinyl)propiophenone hydrochloride 833-86-3 C13H17NO.ClH
1-bromo-3-(trifluoromethyl)-5H,6H,7H,8H-imidazo[1,5-a]pyrazine hydrochloride 1-bromo-3-(trifluoromethyl)-5H,6H,7H,8H-imidazo[1,5-a]pyrazine hydrochloride 2138351-97-8 C7H8BrClF3N3
4,5-dihydro-2-(2-methoxyphenyl)-1-[2-(2-methoxyphenyl)-4,5-diphenyl-2H-imidazol-2-yl]-1H-imidazole 4,5-dihydro-2-(2-methoxyphenyl)-1-[2-(2-methoxyphenyl)-4,5-diphenyl-2H-imidazol-2-yl]-1H-imidazole 7292-18-4 C32H28N4O2
1-(methoxymethyl)-1H-imidazole 1-(methoxymethyl)-1H-imidazole 20075-26-7 C5H8N2O
1-(tert-butyl)pyrrolidin-2-one 1-(tert-butyl)pyrrolidin-2-one 20687-53-0 C8H15NO
N-acetylsulphanilic acid N-acetylsulphanilic acid 121-62-0 C8H9NO4S
1-methyl-5-thioxopyrrolidin-2-one 1-methyl-5-thioxopyrrolidin-2-one 2043-24-5 C5H7NOS
4-(morpholin-4-yl-phenoxy-phosphoryl)morpholine 4-(morpholin-4-yl-phenoxy-phosphoryl)morpholine 4881-17-8 C14H21N2O4P
2-Mercaptobenzoxazole 2-Mercaptobenzoxazole 2382-96-9 C7H5NOS
2-(METHYLTHIO)-2-IMIDAZOLINE 2-(METHYLTHIO)-2-IMIDAZOLINE 20112-79-2 C4H8N2S
3,4-Epoxytetrahydrofuran 3,4-Epoxytetrahydrofuran 285-69-8 C4H6O2
7-METHYL-IMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLIC ACID 7-METHYL-IMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLIC ACID 80353-94-2 C9H8N2O2
2,4-DICHLORO-5-FLUOROQUINAZOLINE 2,4-DICHLORO-5-FLUOROQUINAZOLINE 87611-00-5 C8H3Cl2FN2
6,8-Dibromo-2-trifluoromethylimidazo[1,2-a]pyrazine 6,8-Dibromo-2-trifluoromethylimidazo[1,2-a]pyrazine 1208082-24-9 C7H2Br2F3N3
5-(Trifluoromethyl)imidazo[1,2-a]pyridine-2-carboxylic acid 5-(Trifluoromethyl)imidazo[1,2-a]pyridine-2-carboxylic acid 1260798-62-6 C9H5F3N2O2
1-(3-METHYLPHENYL)-2-OXO-3-PYRROLIDINEC& 1-(3-METHYLPHENYL)-2-OXO-3-PYRROLIDINEC& 618070-31-8 C12H13NO3
(S)-4-bromo-1-(pyrrolidin-3-yl)-1H-pyrazole hydrochloride (S)-4-bromo-1-(pyrrolidin-3-yl)-1H-pyrazole hydrochloride 2828444-32-0 C7H11BrClN3
2-Pyridinecarboximidic acid, 2-methylhydrazide 2-Pyridinecarboximidic acid, 2-methylhydrazide 28819-35-4 C7H10N4
(R)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole (R)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole
Pyrrolo[1,2-c]pyrimidine-3-carboxylic acid (9CI) Pyrrolo[1,2-c]pyrimidine-3-carboxylic acid (9CI) 251102-27-9 C8H6N2O2
Pyrrolidine, 2-(2-fluorophenyl)-4-methyl- (9CI) Pyrrolidine, 2-(2-fluorophenyl)-4-methyl- (9CI) 603068-40-2 C11H14FN
1H-Imidazole-1-propanoic acid, α-cyclopropyl-α-(methylamino)- 1H-Imidazole-1-propanoic acid, α-cyclopropyl-α-(methylamino)- 1338993-61-5 C10H15N3O2
1-Pyrrolidinecarboxylic acid, 3-(difluoromethyl)-4-hydroxy-, 1,1-dimethylethyl ester, (3R,4S)-rel- 1-Pyrrolidinecarboxylic acid, 3-(difluoromethyl)-4-hydroxy-, 1,1-dimethylethyl ester, (3R,4S)-rel- 2368911-11-7 C10H17F2NO3
2-Pyrrolidinemethanol, 1-methyl-4-(trifluoromethyl)-, (2S,4R)- 2-Pyrrolidinemethanol, 1-methyl-4-(trifluoromethyl)-, (2S,4R)- 2621932-86-1 C7H12F3NO
2,4-diamino-6-chloropyrimidine-1-oxide 2,4-diamino-6-chloropyrimidine-1-oxide
6-bromo-2-fluoro-3-(3-(pyrrolidin-1-yl)propoxy)benzonitrile 6-bromo-2-fluoro-3-(3-(pyrrolidin-1-yl)propoxy)benzonitrile
5-Bromo-quinazoline 5-Bromo-quinazoline 958452-00-1 C8H5BrN2
3-(1H-Benzimidazol-1-yl)propanenitrile 3-(1H-Benzimidazol-1-yl)propanenitrile 4414-84-0 C10H9N3
1-hydroxybenzotriazole monohydrate 1-hydroxybenzotriazole monohydrate C6H7N3O2
2-Bromo-5-fluoropyridine 1-oxide 2-Bromo-5-fluoropyridine 1-oxide 935534-39-7 C5H3BrFNO
3-[(2S)-1,2,3,6-tetrahydropyridin-2-yl]pyridine 3-[(2S)-1,2,3,6-tetrahydropyridin-2-yl]pyridine 581-49-7 C10H12N2
SMMC7721/FU SMMC7721/FU
3-amino-5-methyl-1H-pyrazole-4-carbonitrile 3-amino-5-methyl-1H-pyrazole-4-carbonitrile 5453-07-6 C5H6N4
(3R,4R)-N-Cbz-3,4-difluoropyrrolidine (3R,4R)-N-Cbz-3,4-difluoropyrrolidine 790658-58-1 C12H13F2NO2
1H-1,2,4-Triazole,1-phenyl-(6CI,7CI,8CI,9CI) 1H-1,2,4-Triazole,1-phenyl-(6CI,7CI,8CI,9CI) 13423-60-4 C8H7N3
1H-Benzimidazole-2-carboxylicacid,5-methyl-(9CI) 1H-Benzimidazole-2-carboxylicacid,5-methyl-(9CI) 99459-47-9 C9H8N2O2
1H-Benzimidazole,2-cyclopropyl-(9CI) 1H-Benzimidazole,2-cyclopropyl-(9CI) 16405-79-1 C10H10N2
1H-Benzimidazol-5-ol,2-amino-(9CI) 1H-Benzimidazol-5-ol,2-amino-(9CI) 51276-85-8 C7H7N3O
2-Butanone,4-(1H-benzimidazol-2-yl)-(9CI) 2-Butanone,4-(1H-benzimidazol-2-yl)-(9CI) 19276-01-8 C11H12N2O
4-Bromo-5-methyl-1H-pyrazol-3-amine 4-Bromo-5-methyl-1H-pyrazol-3-amine 1780-72-9 C4H6BrN3
1-[2,5-Anhydro-4-C-(hydroxymethyl)-alpha-L-lyxofuranosyl]-5-methyl-2,4(1H,3H)-pyrimidinedione 1-[2,5-Anhydro-4-C-(hydroxymethyl)-alpha-L-lyxofuranosyl]-5-methyl-2,4(1H,3H)-pyrimidinedione 206055-67-6 C11H14N2O6
3-IODO-6-METHYL-IMIDAZO[1,2-A]PYRIDINE 3-IODO-6-METHYL-IMIDAZO[1,2-A]PYRIDINE 885276-23-3 C8H7IN2
5-Methoxyindole 5-Methoxyindole 1006-94-6 C9H9NO
2-(4-CHLORO-PHENYL)-IMIDAZO[1,2-A]PYRIDINE 2-(4-CHLORO-PHENYL)-IMIDAZO[1,2-A]PYRIDINE 38922-74-6 C13H9ClN2
1-[(4-Nitrophenyl)methyl]pyrazole 1-[(4-Nitrophenyl)methyl]pyrazole 110525-57-0 C10H9N3O2
3,5-Diamino-1H-pyrazole 3,5-Diamino-1H-pyrazole 16082-33-0 C3H6N4
5-(CHLOROMETHYL)PYRIDINE-2-CARBALDEHYDE 5-(CHLOROMETHYL)PYRIDINE-2-CARBALDEHYDE 754920-10-0 C7H6ClNO
2,4-DICHLORO-7-IODO-5H-PYRROLO[3,2-D]PYRIMIDINE 2,4-DICHLORO-7-IODO-5H-PYRROLO[3,2-D]PYRIMIDINE 928840-99-7 C6H2Cl2IN3
3-CHLOROMETHYL-PYRROLIDINE 3-CHLOROMETHYL-PYRROLIDINE 876509-14-7 C5H10ClN
2,6-DICHLORO-N-METHYL-4-PYRIMIDINAMINE 2,6-DICHLORO-N-METHYL-4-PYRIMIDINAMINE 32998-03-1 C5H5Cl2N3
N-BOC-3-BROMO-4-HYDROXY-PYRROLIDINE N-BOC-3-BROMO-4-HYDROXY-PYRROLIDINE 1017782-17-0 C9H16BrNO3
6-Amino-5-(2,2-diethoxyethyl)pyrimidin-4-ol 6-Amino-5-(2,2-diethoxyethyl)pyrimidin-4-ol 7400-06-8 C10H17N3O3
1H-pyrazole, 4-iodo-1,3-dimethyl- 1H-pyrazole, 4-iodo-1,3-dimethyl- 6647-97-8 C5H7IN2
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